Experiment: A22 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_103 and Ac3H11_104 overlap by 1 nucleotides Ac3H11_104 and Ac3H11_105 overlap by 1 nucleotides Ac3H11_105 and Ac3H11_106 are separated by 63 nucleotides
Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961
_103
Ac3H11_104 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 107,961 to 108,710
_104
Ac3H11_105 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 108,710 to 109,414
_105
Ac3H11_106 - ATP-dependent protease La (EC 3.4.21.53) Type II, at 109,478 to 111,970
_106
Position (kb) 108
109
110 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 107.763 kb on + strand, within Ac3H11_103 at 107.764 kb on - strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.927 kb on + strand at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.122 kb on - strand, within Ac3H11_104 at 108.122 kb on - strand, within Ac3H11_104 at 108.372 kb on - strand, within Ac3H11_104 at 108.372 kb on - strand, within Ac3H11_104 at 108.691 kb on - strand at 108.768 kb on + strand at 108.768 kb on + strand at 108.769 kb on - strand at 108.827 kb on - strand, within Ac3H11_105 at 108.904 kb on + strand, within Ac3H11_105 at 108.904 kb on + strand, within Ac3H11_105 at 108.905 kb on - strand, within Ac3H11_105 at 108.905 kb on - strand, within Ac3H11_105 at 109.068 kb on - strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.328 kb on + strand, within Ac3H11_105 at 109.329 kb on - strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.330 kb on + strand, within Ac3H11_105 at 109.331 kb on - strand, within Ac3H11_105 at 109.331 kb on - strand, within Ac3H11_105 at 109.335 kb on + strand, within Ac3H11_105 at 109.335 kb on + strand, within Ac3H11_105 at 109.335 kb on + strand, within Ac3H11_105 at 109.336 kb on - strand, within Ac3H11_105 at 109.353 kb on + strand at 109.353 kb on + strand at 109.354 kb on - strand at 109.701 kb on + strand at 109.702 kb on - strand at 109.702 kb on - strand at 109.702 kb on - strand at 109.951 kb on - strand, within Ac3H11_106 at 109.951 kb on - strand, within Ac3H11_106 at 109.992 kb on + strand, within Ac3H11_106 at 109.993 kb on - strand, within Ac3H11_106 at 110.061 kb on + strand, within Ac3H11_106 at 110.061 kb on + strand, within Ac3H11_106 at 110.107 kb on + strand, within Ac3H11_106 at 110.108 kb on - strand, within Ac3H11_106
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.025 mg/ml remove 107,763 + Ac3H11_103 0.81 -0.8 107,764 - Ac3H11_103 0.81 +2.0 107,776 + Ac3H11_103 0.82 +0.2 107,776 + Ac3H11_103 0.82 -0.4 107,927 + -1.3 108,121 + Ac3H11_104 0.21 +0.7 108,121 + Ac3H11_104 0.21 +0.1 108,121 + Ac3H11_104 0.21 -2.3 108,121 + Ac3H11_104 0.21 +0.3 108,121 + Ac3H11_104 0.21 +0.9 108,122 - Ac3H11_104 0.21 +0.4 108,122 - Ac3H11_104 0.21 +0.7 108,372 - Ac3H11_104 0.55 +0.6 108,372 - Ac3H11_104 0.55 -0.7 108,691 - -1.4 108,768 + -2.4 108,768 + +0.6 108,769 - +0.7 108,827 - Ac3H11_105 0.17 -0.3 108,904 + Ac3H11_105 0.28 -0.0 108,904 + Ac3H11_105 0.28 -1.2 108,905 - Ac3H11_105 0.28 +1.0 108,905 - Ac3H11_105 0.28 -0.2 109,068 - Ac3H11_105 0.51 -0.3 109,328 + Ac3H11_105 0.88 -0.7 109,328 + Ac3H11_105 0.88 -0.7 109,328 + Ac3H11_105 0.88 +0.5 109,328 + Ac3H11_105 0.88 +0.2 109,328 + Ac3H11_105 0.88 -3.4 109,329 - Ac3H11_105 0.88 +0.0 109,330 + Ac3H11_105 0.88 -0.1 109,330 + Ac3H11_105 0.88 -0.6 109,330 + Ac3H11_105 0.88 +0.5 109,330 + Ac3H11_105 0.88 -0.3 109,331 - Ac3H11_105 0.88 +0.9 109,331 - Ac3H11_105 0.88 +0.6 109,335 + Ac3H11_105 0.89 -1.0 109,335 + Ac3H11_105 0.89 +1.7 109,335 + Ac3H11_105 0.89 -1.6 109,336 - Ac3H11_105 0.89 -0.8 109,353 + -1.0 109,353 + -1.9 109,354 - -1.3 109,701 + -1.4 109,702 - +0.4 109,702 - +0.6 109,702 - +0.6 109,951 - Ac3H11_106 0.19 -0.8 109,951 - Ac3H11_106 0.19 -1.2 109,992 + Ac3H11_106 0.21 -0.2 109,993 - Ac3H11_106 0.21 +0.3 110,061 + Ac3H11_106 0.23 -0.6 110,061 + Ac3H11_106 0.23 +0.5 110,107 + Ac3H11_106 0.25 -0.5 110,108 - Ac3H11_106 0.25 +0.1
Or see this region's nucleotide sequence