Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13850

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13840 and AZOBR_RS13845 are separated by 89 nucleotidesAZOBR_RS13845 and AZOBR_RS13850 are separated by 388 nucleotidesAZOBR_RS13850 and AZOBR_RS13855 are separated by 204 nucleotidesAZOBR_RS13855 and AZOBR_RS13860 are separated by 7 nucleotides AZOBR_RS13840: AZOBR_RS13840 - hypothetical protein, at 2,915,565 to 2,915,750 _RS13840 AZOBR_RS13845: AZOBR_RS13845 - hypothetical protein, at 2,915,840 to 2,916,238 _RS13845 AZOBR_RS13850: AZOBR_RS13850 - hypothetical protein, at 2,916,627 to 2,916,869 _RS13850 AZOBR_RS13855: AZOBR_RS13855 - hypothetical protein, at 2,917,074 to 2,917,601 _RS13855 AZOBR_RS13860: AZOBR_RS13860 - hypothetical protein, at 2,917,609 to 2,917,914 _RS13860 Position (kb) 2916 2917Strain fitness (log2 ratio) -1 0 1at 2915.763 kb on + strandat 2915.764 kb on - strandat 2915.788 kb on + strandat 2915.789 kb on - strandat 2915.793 kb on + strandat 2915.793 kb on + strandat 2915.793 kb on + strandat 2915.793 kb on + strandat 2915.794 kb on - strandat 2915.794 kb on - strandat 2915.909 kb on + strand, within AZOBR_RS13845at 2916.213 kb on - strandat 2916.216 kb on - strandat 2916.216 kb on - strandat 2916.285 kb on + strandat 2916.286 kb on - strandat 2916.528 kb on + strandat 2916.695 kb on - strand, within AZOBR_RS13850at 2916.837 kb on + strand, within AZOBR_RS13850at 2916.838 kb on - strand, within AZOBR_RS13850at 2916.841 kb on - strand, within AZOBR_RS13850at 2916.841 kb on - strand, within AZOBR_RS13850at 2916.941 kb on + strandat 2916.941 kb on + strandat 2916.941 kb on + strandat 2916.942 kb on - strandat 2917.065 kb on + strandat 2917.065 kb on + strandat 2917.065 kb on + strandat 2917.065 kb on + strandat 2917.066 kb on - strandat 2917.066 kb on - strandat 2917.098 kb on + strandat 2917.600 kb on - strandat 2917.664 kb on - strand, within AZOBR_RS13860

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,915,763 + -0.1
2,915,764 - +0.4
2,915,788 + -0.9
2,915,789 - +0.1
2,915,793 + -0.7
2,915,793 + -0.0
2,915,793 + +0.3
2,915,793 + -0.4
2,915,794 - -0.2
2,915,794 - -0.0
2,915,909 + AZOBR_RS13845 0.17 -1.3
2,916,213 - -1.4
2,916,216 - +0.4
2,916,216 - -0.6
2,916,285 + +0.2
2,916,286 - +0.6
2,916,528 + -0.2
2,916,695 - AZOBR_RS13850 0.28 +0.1
2,916,837 + AZOBR_RS13850 0.86 -0.7
2,916,838 - AZOBR_RS13850 0.87 -1.0
2,916,841 - AZOBR_RS13850 0.88 +0.2
2,916,841 - AZOBR_RS13850 0.88 -0.9
2,916,941 + -1.2
2,916,941 + -1.2
2,916,941 + -0.9
2,916,942 - -1.3
2,917,065 + -0.3
2,917,065 + -0.1
2,917,065 + -1.0
2,917,065 + -0.6
2,917,066 - -0.6
2,917,066 - +0.0
2,917,098 + -1.0
2,917,600 - +0.8
2,917,664 - AZOBR_RS13860 0.18 +0.1

Or see this region's nucleotide sequence