Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21220

Experiment: nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21215 and ABZR86_RS21220 are separated by 14 nucleotidesABZR86_RS21220 and ABZR86_RS21225 are separated by 236 nucleotidesABZR86_RS21225 and ABZR86_RS21230 are separated by 66 nucleotides ABZR86_RS21215: ABZR86_RS21215 - L-histidine N(alpha)-methyltransferase, at 211,495 to 212,472 _RS21215 ABZR86_RS21220: ABZR86_RS21220 - ergothioneine biosynthesis protein EgtB, at 212,487 to 213,752 _RS21220 ABZR86_RS21225: ABZR86_RS21225 - DUF6491 family protein, at 213,989 to 214,429 _RS21225 ABZR86_RS21230: ABZR86_RS21230 - hypothetical protein, at 214,496 to 214,858 _RS21230 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.517 kb on + strandat 211.518 kb on - strandat 211.518 kb on - strandat 211.610 kb on + strand, within ABZR86_RS21215at 211.610 kb on + strand, within ABZR86_RS21215at 211.611 kb on - strand, within ABZR86_RS21215at 211.622 kb on + strand, within ABZR86_RS21215at 211.622 kb on + strand, within ABZR86_RS21215at 211.623 kb on - strand, within ABZR86_RS21215at 211.623 kb on - strand, within ABZR86_RS21215at 211.736 kb on + strand, within ABZR86_RS21215at 211.736 kb on + strand, within ABZR86_RS21215at 211.736 kb on + strand, within ABZR86_RS21215at 211.737 kb on - strand, within ABZR86_RS21215at 211.737 kb on - strand, within ABZR86_RS21215at 211.897 kb on + strand, within ABZR86_RS21215at 211.897 kb on + strand, within ABZR86_RS21215at 211.897 kb on + strand, within ABZR86_RS21215at 211.898 kb on - strand, within ABZR86_RS21215at 211.898 kb on - strand, within ABZR86_RS21215at 211.898 kb on - strand, within ABZR86_RS21215at 211.898 kb on - strand, within ABZR86_RS21215at 211.991 kb on + strand, within ABZR86_RS21215at 211.991 kb on + strand, within ABZR86_RS21215at 211.992 kb on - strand, within ABZR86_RS21215at 211.992 kb on - strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.147 kb on + strand, within ABZR86_RS21215at 212.148 kb on - strand, within ABZR86_RS21215at 212.148 kb on - strand, within ABZR86_RS21215at 212.148 kb on - strand, within ABZR86_RS21215at 212.148 kb on - strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.297 kb on + strand, within ABZR86_RS21215at 212.298 kb on - strand, within ABZR86_RS21215at 212.298 kb on - strand, within ABZR86_RS21215at 212.298 kb on - strand, within ABZR86_RS21215at 212.298 kb on - strand, within ABZR86_RS21215at 212.298 kb on - strand, within ABZR86_RS21215at 212.300 kb on + strand, within ABZR86_RS21215at 212.301 kb on - strand, within ABZR86_RS21215at 212.301 kb on - strand, within ABZR86_RS21215at 212.301 kb on - strand, within ABZR86_RS21215at 212.301 kb on - strand, within ABZR86_RS21215at 212.351 kb on + strand, within ABZR86_RS21215at 212.351 kb on + strand, within ABZR86_RS21215at 212.352 kb on - strand, within ABZR86_RS21215at 212.554 kb on + strandat 212.554 kb on + strandat 212.555 kb on - strandat 212.555 kb on - strandat 212.635 kb on + strand, within ABZR86_RS21220at 212.635 kb on + strand, within ABZR86_RS21220at 212.635 kb on + strand, within ABZR86_RS21220at 212.635 kb on + strand, within ABZR86_RS21220at 212.636 kb on - strand, within ABZR86_RS21220at 212.636 kb on - strand, within ABZR86_RS21220at 212.636 kb on - strand, within ABZR86_RS21220at 212.636 kb on - strand, within ABZR86_RS21220at 212.675 kb on - strand, within ABZR86_RS21220at 212.683 kb on + strand, within ABZR86_RS21220at 212.683 kb on + strand, within ABZR86_RS21220at 212.716 kb on + strand, within ABZR86_RS21220at 212.716 kb on + strand, within ABZR86_RS21220at 212.716 kb on + strand, within ABZR86_RS21220at 212.716 kb on + strand, within ABZR86_RS21220at 212.716 kb on + strand, within ABZR86_RS21220at 212.727 kb on + strand, within ABZR86_RS21220at 212.727 kb on + strand, within ABZR86_RS21220at 212.728 kb on - strand, within ABZR86_RS21220at 212.728 kb on - strand, within ABZR86_RS21220at 212.932 kb on + strand, within ABZR86_RS21220at 212.932 kb on + strand, within ABZR86_RS21220at 212.959 kb on + strand, within ABZR86_RS21220at 212.959 kb on + strand, within ABZR86_RS21220at 213.193 kb on + strand, within ABZR86_RS21220at 213.194 kb on - strand, within ABZR86_RS21220at 213.194 kb on - strand, within ABZR86_RS21220at 213.194 kb on - strand, within ABZR86_RS21220at 213.194 kb on - strand, within ABZR86_RS21220at 213.490 kb on + strand, within ABZR86_RS21220at 213.491 kb on - strand, within ABZR86_RS21220at 213.493 kb on + strand, within ABZR86_RS21220at 213.493 kb on + strand, within ABZR86_RS21220at 213.493 kb on + strand, within ABZR86_RS21220at 213.508 kb on + strand, within ABZR86_RS21220at 213.508 kb on + strand, within ABZR86_RS21220at 213.508 kb on + strand, within ABZR86_RS21220at 213.508 kb on + strand, within ABZR86_RS21220at 213.508 kb on + strand, within ABZR86_RS21220at 213.508 kb on + strand, within ABZR86_RS21220at 213.509 kb on - strand, within ABZR86_RS21220at 213.509 kb on - strand, within ABZR86_RS21220at 213.509 kb on - strand, within ABZR86_RS21220at 213.509 kb on - strand, within ABZR86_RS21220at 213.509 kb on - strand, within ABZR86_RS21220at 213.509 kb on - strand, within ABZR86_RS21220at 213.581 kb on + strand, within ABZR86_RS21220at 213.581 kb on + strand, within ABZR86_RS21220at 213.582 kb on - strand, within ABZR86_RS21220at 213.817 kb on + strandat 213.818 kb on - strandat 213.913 kb on + strandat 213.913 kb on + strandat 213.914 kb on - strandat 213.914 kb on - strandat 213.914 kb on - strandat 213.914 kb on - strandat 214.117 kb on + strand, within ABZR86_RS21225at 214.117 kb on + strand, within ABZR86_RS21225at 214.117 kb on + strand, within ABZR86_RS21225at 214.117 kb on + strand, within ABZR86_RS21225at 214.117 kb on + strand, within ABZR86_RS21225at 214.118 kb on - strand, within ABZR86_RS21225at 214.118 kb on - strand, within ABZR86_RS21225at 214.118 kb on - strand, within ABZR86_RS21225at 214.206 kb on + strand, within ABZR86_RS21225at 214.206 kb on + strand, within ABZR86_RS21225at 214.207 kb on - strand, within ABZR86_RS21225at 214.213 kb on - strand, within ABZR86_RS21225at 214.367 kb on + strand, within ABZR86_RS21225at 214.367 kb on + strand, within ABZR86_RS21225at 214.367 kb on + strand, within ABZR86_RS21225at 214.368 kb on - strand, within ABZR86_RS21225at 214.510 kb on - strandat 214.513 kb on - strandat 214.539 kb on + strand, within ABZR86_RS21230at 214.539 kb on + strand, within ABZR86_RS21230at 214.540 kb on - strand, within ABZR86_RS21230at 214.540 kb on - strand, within ABZR86_RS21230at 214.540 kb on - strand, within ABZR86_RS21230at 214.542 kb on + strand, within ABZR86_RS21230at 214.557 kb on + strand, within ABZR86_RS21230at 214.557 kb on + strand, within ABZR86_RS21230at 214.558 kb on - strand, within ABZR86_RS21230at 214.558 kb on - strand, within ABZR86_RS21230at 214.572 kb on + strand, within ABZR86_RS21230at 214.572 kb on + strand, within ABZR86_RS21230at 214.572 kb on + strand, within ABZR86_RS21230at 214.572 kb on + strand, within ABZR86_RS21230at 214.572 kb on + strand, within ABZR86_RS21230at 214.573 kb on - strand, within ABZR86_RS21230at 214.573 kb on - strand, within ABZR86_RS21230at 214.573 kb on - strand, within ABZR86_RS21230at 214.573 kb on - strand, within ABZR86_RS21230at 214.605 kb on + strand, within ABZR86_RS21230at 214.605 kb on + strand, within ABZR86_RS21230at 214.606 kb on - strand, within ABZR86_RS21230at 214.606 kb on - strand, within ABZR86_RS21230at 214.606 kb on - strand, within ABZR86_RS21230at 214.606 kb on - strand, within ABZR86_RS21230at 214.608 kb on + strand, within ABZR86_RS21230at 214.608 kb on + strand, within ABZR86_RS21230at 214.608 kb on + strand, within ABZR86_RS21230at 214.608 kb on + strand, within ABZR86_RS21230at 214.608 kb on + strand, within ABZR86_RS21230at 214.608 kb on + strand, within ABZR86_RS21230at 214.609 kb on - strand, within ABZR86_RS21230at 214.609 kb on - strand, within ABZR86_RS21230at 214.609 kb on - strand, within ABZR86_RS21230at 214.609 kb on - strand, within ABZR86_RS21230at 214.632 kb on + strand, within ABZR86_RS21230at 214.632 kb on + strand, within ABZR86_RS21230at 214.632 kb on + strand, within ABZR86_RS21230at 214.633 kb on - strand, within ABZR86_RS21230at 214.633 kb on - strand, within ABZR86_RS21230at 214.633 kb on - strand, within ABZR86_RS21230at 214.635 kb on + strand, within ABZR86_RS21230at 214.636 kb on - strand, within ABZR86_RS21230at 214.636 kb on - strand, within ABZR86_RS21230at 214.651 kb on - strand, within ABZR86_RS21230at 214.662 kb on + strand, within ABZR86_RS21230at 214.662 kb on + strand, within ABZR86_RS21230at 214.663 kb on - strand, within ABZR86_RS21230at 214.663 kb on - strand, within ABZR86_RS21230at 214.665 kb on + strand, within ABZR86_RS21230at 214.677 kb on + strand, within ABZR86_RS21230at 214.678 kb on - strand, within ABZR86_RS21230

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 6 mM
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211,517 + +0.6
211,518 - -0.1
211,518 - +1.1
211,610 + ABZR86_RS21215 0.12 -0.4
211,610 + ABZR86_RS21215 0.12 -0.3
211,611 - ABZR86_RS21215 0.12 +0.7
211,622 + ABZR86_RS21215 0.13 +0.1
211,622 + ABZR86_RS21215 0.13 -0.3
211,623 - ABZR86_RS21215 0.13 -0.1
211,623 - ABZR86_RS21215 0.13 +0.3
211,736 + ABZR86_RS21215 0.25 +0.1
211,736 + ABZR86_RS21215 0.25 +1.8
211,736 + ABZR86_RS21215 0.25 -0.2
211,737 - ABZR86_RS21215 0.25 +0.4
211,737 - ABZR86_RS21215 0.25 +0.2
211,897 + ABZR86_RS21215 0.41 -0.1
211,897 + ABZR86_RS21215 0.41 -0.4
211,897 + ABZR86_RS21215 0.41 -0.1
211,898 - ABZR86_RS21215 0.41 +0.1
211,898 - ABZR86_RS21215 0.41 -0.3
211,898 - ABZR86_RS21215 0.41 +0.0
211,898 - ABZR86_RS21215 0.41 -0.5
211,991 + ABZR86_RS21215 0.51 -0.1
211,991 + ABZR86_RS21215 0.51 +1.3
211,992 - ABZR86_RS21215 0.51 -0.4
211,992 - ABZR86_RS21215 0.51 -0.0
212,147 + ABZR86_RS21215 0.67 -0.2
212,147 + ABZR86_RS21215 0.67 +0.4
212,147 + ABZR86_RS21215 0.67 -0.2
212,147 + ABZR86_RS21215 0.67 +0.0
212,147 + ABZR86_RS21215 0.67 +0.5
212,147 + ABZR86_RS21215 0.67 +0.3
212,147 + ABZR86_RS21215 0.67 +1.5
212,148 - ABZR86_RS21215 0.67 +0.1
212,148 - ABZR86_RS21215 0.67 +0.4
212,148 - ABZR86_RS21215 0.67 -0.7
212,148 - ABZR86_RS21215 0.67 -0.5
212,297 + ABZR86_RS21215 0.82 -0.1
212,297 + ABZR86_RS21215 0.82 +0.6
212,297 + ABZR86_RS21215 0.82 +0.3
212,297 + ABZR86_RS21215 0.82 +1.3
212,297 + ABZR86_RS21215 0.82 +0.1
212,297 + ABZR86_RS21215 0.82 -1.4
212,297 + ABZR86_RS21215 0.82 +1.3
212,297 + ABZR86_RS21215 0.82 +0.2
212,298 - ABZR86_RS21215 0.82 +0.3
212,298 - ABZR86_RS21215 0.82 -0.8
212,298 - ABZR86_RS21215 0.82 +0.4
212,298 - ABZR86_RS21215 0.82 +0.1
212,298 - ABZR86_RS21215 0.82 +1.3
212,300 + ABZR86_RS21215 0.82 +0.8
212,301 - ABZR86_RS21215 0.82 -0.0
212,301 - ABZR86_RS21215 0.82 +0.5
212,301 - ABZR86_RS21215 0.82 +0.3
212,301 - ABZR86_RS21215 0.82 +0.2
212,351 + ABZR86_RS21215 0.88 -0.1
212,351 + ABZR86_RS21215 0.88 +0.2
212,352 - ABZR86_RS21215 0.88 -0.1
212,554 + -0.5
212,554 + +0.0
212,555 - -0.2
212,555 - +0.1
212,635 + ABZR86_RS21220 0.12 +0.1
212,635 + ABZR86_RS21220 0.12 +0.1
212,635 + ABZR86_RS21220 0.12 +0.2
212,635 + ABZR86_RS21220 0.12 +0.5
212,636 - ABZR86_RS21220 0.12 -0.4
212,636 - ABZR86_RS21220 0.12 +1.1
212,636 - ABZR86_RS21220 0.12 +0.6
212,636 - ABZR86_RS21220 0.12 +0.7
212,675 - ABZR86_RS21220 0.15 +0.1
212,683 + ABZR86_RS21220 0.15 -0.4
212,683 + ABZR86_RS21220 0.15 +0.1
212,716 + ABZR86_RS21220 0.18 -0.4
212,716 + ABZR86_RS21220 0.18 +0.1
212,716 + ABZR86_RS21220 0.18 -0.9
212,716 + ABZR86_RS21220 0.18 -0.2
212,716 + ABZR86_RS21220 0.18 +0.5
212,727 + ABZR86_RS21220 0.19 +0.5
212,727 + ABZR86_RS21220 0.19 -0.2
212,728 - ABZR86_RS21220 0.19 -0.3
212,728 - ABZR86_RS21220 0.19 -0.5
212,932 + ABZR86_RS21220 0.35 +1.7
212,932 + ABZR86_RS21220 0.35 +0.7
212,959 + ABZR86_RS21220 0.37 -1.3
212,959 + ABZR86_RS21220 0.37 +0.7
213,193 + ABZR86_RS21220 0.56 +0.7
213,194 - ABZR86_RS21220 0.56 +1.1
213,194 - ABZR86_RS21220 0.56 +0.8
213,194 - ABZR86_RS21220 0.56 -0.7
213,194 - ABZR86_RS21220 0.56 +0.0
213,490 + ABZR86_RS21220 0.79 +0.1
213,491 - ABZR86_RS21220 0.79 +0.6
213,493 + ABZR86_RS21220 0.79 +0.4
213,493 + ABZR86_RS21220 0.79 -0.1
213,493 + ABZR86_RS21220 0.79 +0.2
213,508 + ABZR86_RS21220 0.81 +0.2
213,508 + ABZR86_RS21220 0.81 +0.7
213,508 + ABZR86_RS21220 0.81 +0.2
213,508 + ABZR86_RS21220 0.81 +0.0
213,508 + ABZR86_RS21220 0.81 +0.4
213,508 + ABZR86_RS21220 0.81 +0.5
213,509 - ABZR86_RS21220 0.81 -2.4
213,509 - ABZR86_RS21220 0.81 +0.3
213,509 - ABZR86_RS21220 0.81 -0.2
213,509 - ABZR86_RS21220 0.81 +0.8
213,509 - ABZR86_RS21220 0.81 +0.3
213,509 - ABZR86_RS21220 0.81 -0.1
213,581 + ABZR86_RS21220 0.86 -0.2
213,581 + ABZR86_RS21220 0.86 +0.7
213,582 - ABZR86_RS21220 0.86 -0.3
213,817 + +0.2
213,818 - +0.0
213,913 + -0.1
213,913 + -0.5
213,914 - -0.4
213,914 - -0.4
213,914 - -0.8
213,914 - -1.0
214,117 + ABZR86_RS21225 0.29 +2.1
214,117 + ABZR86_RS21225 0.29 +0.2
214,117 + ABZR86_RS21225 0.29 +0.2
214,117 + ABZR86_RS21225 0.29 -0.0
214,117 + ABZR86_RS21225 0.29 -0.1
214,118 - ABZR86_RS21225 0.29 +0.1
214,118 - ABZR86_RS21225 0.29 +0.2
214,118 - ABZR86_RS21225 0.29 -0.0
214,206 + ABZR86_RS21225 0.49 -0.3
214,206 + ABZR86_RS21225 0.49 -0.5
214,207 - ABZR86_RS21225 0.49 -0.6
214,213 - ABZR86_RS21225 0.51 +0.2
214,367 + ABZR86_RS21225 0.86 -0.9
214,367 + ABZR86_RS21225 0.86 -1.8
214,367 + ABZR86_RS21225 0.86 +0.1
214,368 - ABZR86_RS21225 0.86 +0.3
214,510 - -0.1
214,513 - +0.3
214,539 + ABZR86_RS21230 0.12 -0.6
214,539 + ABZR86_RS21230 0.12 -0.4
214,540 - ABZR86_RS21230 0.12 +0.1
214,540 - ABZR86_RS21230 0.12 +0.3
214,540 - ABZR86_RS21230 0.12 +0.4
214,542 + ABZR86_RS21230 0.13 -0.6
214,557 + ABZR86_RS21230 0.17 +0.6
214,557 + ABZR86_RS21230 0.17 -0.8
214,558 - ABZR86_RS21230 0.17 -0.3
214,558 - ABZR86_RS21230 0.17 +0.2
214,572 + ABZR86_RS21230 0.21 +0.6
214,572 + ABZR86_RS21230 0.21 -0.6
214,572 + ABZR86_RS21230 0.21 +0.4
214,572 + ABZR86_RS21230 0.21 -0.5
214,572 + ABZR86_RS21230 0.21 -0.1
214,573 - ABZR86_RS21230 0.21 -0.7
214,573 - ABZR86_RS21230 0.21 -0.5
214,573 - ABZR86_RS21230 0.21 -0.6
214,573 - ABZR86_RS21230 0.21 +0.5
214,605 + ABZR86_RS21230 0.30 +0.2
214,605 + ABZR86_RS21230 0.30 -0.3
214,606 - ABZR86_RS21230 0.30 -0.2
214,606 - ABZR86_RS21230 0.30 -0.3
214,606 - ABZR86_RS21230 0.30 +0.0
214,606 - ABZR86_RS21230 0.30 -0.1
214,608 + ABZR86_RS21230 0.31 +0.2
214,608 + ABZR86_RS21230 0.31 -0.2
214,608 + ABZR86_RS21230 0.31 +0.3
214,608 + ABZR86_RS21230 0.31 +0.4
214,608 + ABZR86_RS21230 0.31 +0.5
214,608 + ABZR86_RS21230 0.31 +0.1
214,609 - ABZR86_RS21230 0.31 -0.8
214,609 - ABZR86_RS21230 0.31 +0.4
214,609 - ABZR86_RS21230 0.31 +0.1
214,609 - ABZR86_RS21230 0.31 +0.8
214,632 + ABZR86_RS21230 0.37 -0.4
214,632 + ABZR86_RS21230 0.37 -0.1
214,632 + ABZR86_RS21230 0.37 +0.5
214,633 - ABZR86_RS21230 0.38 -0.4
214,633 - ABZR86_RS21230 0.38 +0.2
214,633 - ABZR86_RS21230 0.38 -1.2
214,635 + ABZR86_RS21230 0.38 +0.6
214,636 - ABZR86_RS21230 0.39 -0.7
214,636 - ABZR86_RS21230 0.39 +1.0
214,651 - ABZR86_RS21230 0.43 +0.5
214,662 + ABZR86_RS21230 0.46 +0.3
214,662 + ABZR86_RS21230 0.46 -0.1
214,663 - ABZR86_RS21230 0.46 +0.1
214,663 - ABZR86_RS21230 0.46 +0.5
214,665 + ABZR86_RS21230 0.47 -0.2
214,677 + ABZR86_RS21230 0.50 +0.2
214,678 - ABZR86_RS21230 0.50 +0.2

Or see this region's nucleotide sequence