Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14535

Experiment: nitrite 6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS14520 and ABZR86_RS14525 are separated by 77 nucleotidesABZR86_RS14525 and ABZR86_RS14530 overlap by 8 nucleotidesABZR86_RS14530 and ABZR86_RS14535 are separated by 40 nucleotidesABZR86_RS14535 and ABZR86_RS14540 are separated by 52 nucleotidesABZR86_RS14540 and ABZR86_RS14545 overlap by 4 nucleotides ABZR86_RS14520: ABZR86_RS14520 - tail fiber protein, at 3,255,231 to 3,255,770 _RS14520 ABZR86_RS14525: ABZR86_RS14525 - GNAT family N-acetyltransferase, at 3,255,848 to 3,256,330 _RS14525 ABZR86_RS14530: ABZR86_RS14530 - hypothetical protein, at 3,256,323 to 3,256,619 _RS14530 ABZR86_RS14535: ABZR86_RS14535 - hypothetical protein, at 3,256,660 to 3,256,887 _RS14535 ABZR86_RS14540: ABZR86_RS14540 - glutathione S-transferase family protein, at 3,256,940 to 3,257,554 _RS14540 ABZR86_RS14545: ABZR86_RS14545 - pyridoxal-phosphate dependent enzyme, at 3,257,551 to 3,258,501 _RS14545 Position (kb) 3256 3257Strain fitness (log2 ratio) -1 0 1at 3255.714 kb on + strand, within ABZR86_RS14520at 3255.899 kb on + strand, within ABZR86_RS14525at 3255.909 kb on + strand, within ABZR86_RS14525at 3255.909 kb on + strand, within ABZR86_RS14525at 3255.910 kb on - strand, within ABZR86_RS14525at 3255.910 kb on - strand, within ABZR86_RS14525at 3255.998 kb on + strand, within ABZR86_RS14525at 3255.998 kb on + strand, within ABZR86_RS14525at 3255.999 kb on - strand, within ABZR86_RS14525at 3255.999 kb on - strand, within ABZR86_RS14525at 3255.999 kb on - strand, within ABZR86_RS14525at 3255.999 kb on - strand, within ABZR86_RS14525at 3256.025 kb on + strand, within ABZR86_RS14525at 3256.067 kb on + strand, within ABZR86_RS14525at 3256.067 kb on + strand, within ABZR86_RS14525at 3256.495 kb on + strand, within ABZR86_RS14530at 3256.703 kb on + strand, within ABZR86_RS14535at 3256.704 kb on - strand, within ABZR86_RS14535at 3256.886 kb on - strandat 3257.004 kb on + strand, within ABZR86_RS14540at 3257.005 kb on - strand, within ABZR86_RS14540at 3257.005 kb on - strand, within ABZR86_RS14540at 3257.163 kb on + strand, within ABZR86_RS14540at 3257.422 kb on - strand, within ABZR86_RS14540at 3257.542 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 6 mM
remove
3,255,714 + ABZR86_RS14520 0.89 +0.4
3,255,899 + ABZR86_RS14525 0.11 -0.1
3,255,909 + ABZR86_RS14525 0.13 -0.1
3,255,909 + ABZR86_RS14525 0.13 +0.5
3,255,910 - ABZR86_RS14525 0.13 +0.0
3,255,910 - ABZR86_RS14525 0.13 +0.7
3,255,998 + ABZR86_RS14525 0.31 +0.7
3,255,998 + ABZR86_RS14525 0.31 +0.7
3,255,999 - ABZR86_RS14525 0.31 +0.1
3,255,999 - ABZR86_RS14525 0.31 -0.1
3,255,999 - ABZR86_RS14525 0.31 +0.3
3,255,999 - ABZR86_RS14525 0.31 +1.2
3,256,025 + ABZR86_RS14525 0.37 -0.1
3,256,067 + ABZR86_RS14525 0.45 -0.1
3,256,067 + ABZR86_RS14525 0.45 +0.2
3,256,495 + ABZR86_RS14530 0.58 +0.1
3,256,703 + ABZR86_RS14535 0.19 +0.1
3,256,704 - ABZR86_RS14535 0.19 +0.3
3,256,886 - -0.2
3,257,004 + ABZR86_RS14540 0.10 -0.3
3,257,005 - ABZR86_RS14540 0.11 -0.5
3,257,005 - ABZR86_RS14540 0.11 +0.5
3,257,163 + ABZR86_RS14540 0.36 -0.2
3,257,422 - ABZR86_RS14540 0.78 +0.4
3,257,542 - +0.0

Or see this region's nucleotide sequence