Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14130

Experiment: nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 6 mM
3,148,623	+		ABZR86_RS14115	0.87	-0.6
3,148,746	+				-0.5
3,148,747	-				+0.0
3,148,747	-				+0.3
3,148,747	-				-0.2
3,148,750	+				+0.3
3,148,750	+				-0.2
3,148,898	+		ABZR86_RS14120	0.29	-0.4
3,148,899	-		ABZR86_RS14120	0.29	-0.5
3,148,899	-		ABZR86_RS14120	0.29	-0.5
3,149,035	+		ABZR86_RS14120	0.82	-1.1
3,149,035	+		ABZR86_RS14120	0.82	+0.2
3,149,036	-		ABZR86_RS14120	0.83	+0.1
3,149,036	-		ABZR86_RS14120	0.83	+0.5
3,149,078	+				+0.2
3,149,079	-				-0.2
3,149,082	+				+0.3
3,149,083	-				+0.0
3,149,083	-				-0.1
3,149,083	-				-0.9
3,149,083	-				+0.3
3,149,133	+		ABZR86_RS14125	0.13	+0.1
3,149,133	+		ABZR86_RS14125	0.13	-0.2
3,149,133	+		ABZR86_RS14125	0.13	-0.3
3,149,134	-		ABZR86_RS14125	0.14	-0.4
3,149,137	-		ABZR86_RS14125	0.15	-0.1
3,149,163	-		ABZR86_RS14125	0.24	+0.4
3,149,175	+		ABZR86_RS14125	0.29	+0.0
3,149,176	-		ABZR86_RS14125	0.29	-0.0
3,149,176	-		ABZR86_RS14125	0.29	+1.9
3,149,262	+		ABZR86_RS14125	0.60	+0.1
3,149,262	+		ABZR86_RS14125	0.60	+0.1
3,149,263	-		ABZR86_RS14125	0.61	-0.1
3,149,325	+		ABZR86_RS14125	0.83	+0.4
3,149,325	+		ABZR86_RS14125	0.83	-1.3
3,149,325	+		ABZR86_RS14125	0.83	+0.1
3,149,325	+		ABZR86_RS14125	0.83	-0.1
3,149,355	+				+0.6
3,149,356	-				-0.0
3,149,364	+				+0.3
3,149,364	+				+0.8
3,149,364	+				-0.1
3,149,365	-				+0.2
3,149,408	+				+0.2
3,149,409	-				-0.4
3,149,681	+		ABZR86_RS14130	0.10	-0.7
3,149,681	+		ABZR86_RS14130	0.10	-0.3
3,149,700	-		ABZR86_RS14130	0.11	+0.8
3,149,767	-		ABZR86_RS14130	0.16	-0.5
3,149,805	+		ABZR86_RS14130	0.19	-0.4
3,149,806	-		ABZR86_RS14130	0.19	-1.5
3,149,906	+		ABZR86_RS14130	0.27	+0.7
3,149,935	+		ABZR86_RS14130	0.29	+0.3
3,149,935	+		ABZR86_RS14130	0.29	-0.9
3,149,935	+		ABZR86_RS14130	0.29	-0.5
3,149,936	-		ABZR86_RS14130	0.29	-0.4
3,149,936	-		ABZR86_RS14130	0.29	+0.3
3,149,985	-		ABZR86_RS14130	0.33	+1.1
3,149,985	-		ABZR86_RS14130	0.33	-0.4
3,150,909	-				-0.1
3,151,006	+				-0.0
3,151,091	+				-0.3
3,151,091	+				+0.9
3,151,194	+				-0.4
3,151,195	-				-0.4
3,151,204	+				-0.1
3,151,205	-				+0.1
3,151,205	-				-0.9
3,151,208	+				-2.3
3,151,208	+				+0.3
3,151,208	+				-0.5
3,151,208	+				+0.7
3,151,208	+				+0.6
3,151,208	+				-0.2
3,151,208	+				+0.2
3,151,209	-				-0.0
3,151,209	-				-0.5
3,151,209	-				-0.2
3,151,209	-				+0.7
3,151,209	-				-0.6
3,151,209	-				-0.2
3,151,209	-				+0.1
3,151,209	-				+0.0
3,151,262	-				+0.6
3,151,262	-				-0.2
3,151,497	+		ABZR86_RS14135	0.23	+0.2
3,151,497	+		ABZR86_RS14135	0.23	+0.1
3,151,497	+		ABZR86_RS14135	0.23	+0.2
3,151,498	-		ABZR86_RS14135	0.23	+0.5
3,151,498	-		ABZR86_RS14135	0.23	+0.1
3,151,513	-		ABZR86_RS14135	0.25	+0.2
3,151,878	+		ABZR86_RS14135	0.54	+0.1