Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09270

Experiment: nitrite 6 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 6 mM
2,064,257	-				+0.3
2,064,309	+				+0.2
2,064,314	+				+0.0
2,064,314	+				+0.5
2,064,314	+				-1.0
2,064,315	-				+0.3
2,064,412	-				-1.4
2,064,431	+				-0.5
2,064,432	-				-0.7
2,064,512	-		ABZR86_RS09265	0.18	-0.1
2,064,512	-		ABZR86_RS09265	0.18	-0.3
2,064,524	+		ABZR86_RS09265	0.20	-0.2
2,064,524	+		ABZR86_RS09265	0.20	-0.6
2,064,524	+		ABZR86_RS09265	0.20	-1.0
2,064,566	+		ABZR86_RS09265	0.25	+0.1
2,064,568	+		ABZR86_RS09265	0.25	-0.9
2,064,568	+		ABZR86_RS09265	0.25	-0.2
2,064,568	+		ABZR86_RS09265	0.25	-1.5
2,064,568	+		ABZR86_RS09265	0.25	+0.3
2,064,568	+		ABZR86_RS09265	0.25	-0.0
2,064,568	+		ABZR86_RS09265	0.25	-0.4
2,064,569	-		ABZR86_RS09265	0.25	+0.5
2,064,569	-		ABZR86_RS09265	0.25	-0.6
2,064,569	-		ABZR86_RS09265	0.25	-0.9
2,064,698	+		ABZR86_RS09265	0.41	-1.3
2,064,698	+		ABZR86_RS09265	0.41	-1.6
2,064,698	+		ABZR86_RS09265	0.41	+1.3
2,064,698	+		ABZR86_RS09265	0.41	-0.7
2,064,699	-		ABZR86_RS09265	0.41	-1.0
2,064,699	-		ABZR86_RS09265	0.41	-1.7
2,064,717	+		ABZR86_RS09265	0.43	-1.2
2,064,717	+		ABZR86_RS09265	0.43	+1.3
2,064,717	+		ABZR86_RS09265	0.43	-0.7
2,064,718	-		ABZR86_RS09265	0.43	-1.0
2,064,718	-		ABZR86_RS09265	0.43	-0.4
2,064,719	+		ABZR86_RS09265	0.43	-0.8
2,064,719	+		ABZR86_RS09265	0.43	-0.0
2,064,719	+		ABZR86_RS09265	0.43	-1.2
2,064,719	+		ABZR86_RS09265	0.43	+1.0
2,064,720	-		ABZR86_RS09265	0.43	-0.6
2,064,770	+		ABZR86_RS09265	0.49	-0.9
2,064,770	+		ABZR86_RS09265	0.49	+0.1
2,064,770	+		ABZR86_RS09265	0.49	-0.5
2,064,771	-		ABZR86_RS09265	0.49	-2.9
2,064,771	-		ABZR86_RS09265	0.49	-0.6
2,064,771	-		ABZR86_RS09265	0.49	-0.6
2,064,980	+		ABZR86_RS09265	0.74	-0.1
2,064,981	-		ABZR86_RS09265	0.75	-0.8
2,064,981	-		ABZR86_RS09265	0.75	+1.4
2,064,981	-		ABZR86_RS09265	0.75	-1.1
2,064,981	-		ABZR86_RS09265	0.75	-0.6
2,064,981	-		ABZR86_RS09265	0.75	-1.1
2,064,981	-		ABZR86_RS09265	0.75	-1.1
2,065,011	+		ABZR86_RS09265	0.78	+0.1
2,065,012	-		ABZR86_RS09265	0.78	-1.6
2,065,146	+				-0.3
2,065,185	+				-0.5
2,065,221	-				+0.1
2,065,224	+				+0.3
2,065,224	+				+0.5
2,065,236	-				+0.4
2,065,269	+				+0.4
2,065,270	-				+0.3
2,065,371	-		ABZR86_RS09270	0.16	+0.1
2,065,393	+		ABZR86_RS09270	0.18	-1.3
2,065,394	-		ABZR86_RS09270	0.19	-0.2
2,065,415	+		ABZR86_RS09270	0.21	+0.5
2,065,415	+		ABZR86_RS09270	0.21	-0.2
2,065,427	+		ABZR86_RS09270	0.22	-0.9
2,065,427	+		ABZR86_RS09270	0.22	-0.1
2,065,427	+		ABZR86_RS09270	0.22	-0.2
2,065,427	+		ABZR86_RS09270	0.22	+0.4
2,065,427	+		ABZR86_RS09270	0.22	-0.1
2,065,432	-		ABZR86_RS09270	0.23	-0.4
2,065,438	-		ABZR86_RS09270	0.24	-0.5
2,065,481	-		ABZR86_RS09270	0.29	-0.1
2,065,542	+		ABZR86_RS09270	0.36	+0.2
2,065,608	+		ABZR86_RS09270	0.43	+0.0
2,065,608	+		ABZR86_RS09270	0.43	+0.4
2,065,608	+		ABZR86_RS09270	0.43	+0.2
2,065,608	+		ABZR86_RS09270	0.43	+0.3
2,065,608	+		ABZR86_RS09270	0.43	+0.2
2,065,609	-		ABZR86_RS09270	0.44	+0.2
2,065,609	-		ABZR86_RS09270	0.44	+0.3
2,065,610	+		ABZR86_RS09270	0.44	+0.2
2,065,610	+		ABZR86_RS09270	0.44	+0.1
2,065,610	+		ABZR86_RS09270	0.44	-0.2
2,065,610	+		ABZR86_RS09270	0.44	+1.0
2,065,611	-		ABZR86_RS09270	0.44	+0.5
2,065,611	-		ABZR86_RS09270	0.44	+0.3
2,065,632	-		ABZR86_RS09270	0.46	+0.3
2,065,632	-		ABZR86_RS09270	0.46	+0.8
2,065,634	+		ABZR86_RS09270	0.46	+0.0
2,065,635	-		ABZR86_RS09270	0.47	+0.0
2,065,664	+		ABZR86_RS09270	0.50	+0.7
2,065,664	+		ABZR86_RS09270	0.50	-0.0
2,065,809	+		ABZR86_RS09270	0.67	-0.4
2,065,809	+		ABZR86_RS09270	0.67	+0.4
2,065,810	-		ABZR86_RS09270	0.67	+0.2
2,065,860	+		ABZR86_RS09270	0.73	+1.2
2,065,872	-		ABZR86_RS09270	0.74	-0.3
2,065,945	-		ABZR86_RS09270	0.83	+0.5
2,065,945	-		ABZR86_RS09270	0.83	-0.1
2,066,018	+				-0.2
2,066,018	+				-0.2
2,066,021	+				+0.4
2,066,022	-				+0.1
2,066,022	-				+0.2
2,066,022	-				+0.1
2,066,022	-				+0.2
2,066,027	+				-0.3
2,066,028	-				-1.4
2,066,028	-				+0.6
2,066,060	+				+0.1
2,066,060	+				-0.1
2,066,060	+				-0.8
2,066,061	-				-0.1
2,066,061	-				+0.4
2,066,076	-				+0.1
2,066,076	-				+0.2
2,066,140	+				+0.5
2,066,140	+				+0.4
2,066,141	-				-0.2
2,066,141	-				+0.1
2,066,160	-				+0.1
2,066,215	+				+1.2
2,066,283	-				-0.2
2,066,283	-				+0.4
2,066,375	-		ABZR86_RS09275	0.23	-0.4
2,066,423	-		ABZR86_RS09275	0.30	-0.8
2,066,506	+		ABZR86_RS09275	0.42	+0.8
2,066,525	+		ABZR86_RS09275	0.45	+0.4
2,066,526	-		ABZR86_RS09275	0.45	-0.1
2,066,526	-		ABZR86_RS09275	0.45	-0.1
2,066,655	-		ABZR86_RS09275	0.64	-0.2
2,066,655	-		ABZR86_RS09275	0.64	-0.0
2,066,655	-		ABZR86_RS09275	0.64	-0.4
2,066,855	-				+0.8
2,067,018	+				+0.1
2,067,046	-				-0.2
2,067,046	-				-0.7