Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06920

Experiment: nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06910 and ABZR86_RS06915 are separated by 193 nucleotidesABZR86_RS06915 and ABZR86_RS06920 are separated by 115 nucleotidesABZR86_RS06920 and ABZR86_RS06925 are separated by 88 nucleotidesABZR86_RS06925 and ABZR86_RS06930 are separated by 9 nucleotides ABZR86_RS06910: ABZR86_RS06910 - hypothetical protein, at 1,523,601 to 1,524,083 _RS06910 ABZR86_RS06915: ABZR86_RS06915 - hypothetical protein, at 1,524,277 to 1,524,645 _RS06915 ABZR86_RS06920: ABZR86_RS06920 - hypothetical protein, at 1,524,761 to 1,525,222 _RS06920 ABZR86_RS06925: ABZR86_RS06925 - dihydrofolate reductase family protein, at 1,525,311 to 1,525,880 _RS06925 ABZR86_RS06930: ABZR86_RS06930 - hypothetical protein, at 1,525,890 to 1,526,315 _RS06930 Position (kb) 1524 1525 1526Strain fitness (log2 ratio) -1 0 1at 1524.035 kb on - strandat 1524.219 kb on + strandat 1524.220 kb on - strandat 1524.220 kb on - strandat 1524.220 kb on - strandat 1524.251 kb on + strandat 1524.252 kb on - strandat 1524.315 kb on + strand, within ABZR86_RS06915at 1524.316 kb on - strand, within ABZR86_RS06915at 1524.316 kb on - strand, within ABZR86_RS06915at 1524.353 kb on - strand, within ABZR86_RS06915at 1524.390 kb on - strand, within ABZR86_RS06915at 1524.396 kb on - strand, within ABZR86_RS06915at 1524.396 kb on - strand, within ABZR86_RS06915at 1524.405 kb on + strand, within ABZR86_RS06915at 1524.431 kb on - strand, within ABZR86_RS06915at 1524.431 kb on - strand, within ABZR86_RS06915at 1524.527 kb on + strand, within ABZR86_RS06915at 1524.528 kb on - strand, within ABZR86_RS06915at 1524.560 kb on + strand, within ABZR86_RS06915at 1524.561 kb on - strand, within ABZR86_RS06915at 1524.599 kb on - strand, within ABZR86_RS06915at 1524.738 kb on + strandat 1524.739 kb on - strandat 1524.739 kb on - strandat 1524.819 kb on + strand, within ABZR86_RS06920at 1524.819 kb on + strand, within ABZR86_RS06920at 1524.820 kb on - strand, within ABZR86_RS06920at 1524.855 kb on + strand, within ABZR86_RS06920at 1524.855 kb on + strand, within ABZR86_RS06920at 1524.855 kb on + strand, within ABZR86_RS06920at 1524.856 kb on - strand, within ABZR86_RS06920at 1524.861 kb on + strand, within ABZR86_RS06920at 1524.862 kb on - strand, within ABZR86_RS06920at 1524.862 kb on - strand, within ABZR86_RS06920at 1525.044 kb on + strand, within ABZR86_RS06920at 1525.068 kb on + strand, within ABZR86_RS06920at 1525.069 kb on - strand, within ABZR86_RS06920at 1525.250 kb on + strandat 1525.251 kb on - strandat 1525.396 kb on - strand, within ABZR86_RS06925at 1525.425 kb on + strand, within ABZR86_RS06925at 1525.425 kb on + strand, within ABZR86_RS06925at 1525.425 kb on + strand, within ABZR86_RS06925at 1525.425 kb on + strand, within ABZR86_RS06925at 1525.425 kb on + strand, within ABZR86_RS06925at 1525.493 kb on - strand, within ABZR86_RS06925at 1525.509 kb on + strand, within ABZR86_RS06925at 1525.510 kb on - strand, within ABZR86_RS06925at 1525.510 kb on - strand, within ABZR86_RS06925at 1525.547 kb on + strand, within ABZR86_RS06925at 1525.573 kb on + strand, within ABZR86_RS06925at 1525.573 kb on + strand, within ABZR86_RS06925at 1525.573 kb on + strand, within ABZR86_RS06925at 1525.573 kb on + strand, within ABZR86_RS06925at 1525.573 kb on + strand, within ABZR86_RS06925at 1525.574 kb on - strand, within ABZR86_RS06925at 1525.588 kb on + strand, within ABZR86_RS06925at 1525.589 kb on - strand, within ABZR86_RS06925at 1525.682 kb on + strand, within ABZR86_RS06925at 1525.769 kb on - strand, within ABZR86_RS06925at 1525.837 kb on + strandat 1525.837 kb on + strandat 1525.837 kb on + strandat 1525.838 kb on - strandat 1525.863 kb on + strandat 1525.863 kb on + strandat 1525.863 kb on + strandat 1525.933 kb on - strand, within ABZR86_RS06930at 1525.933 kb on - strand, within ABZR86_RS06930at 1525.933 kb on - strand, within ABZR86_RS06930at 1526.105 kb on - strand, within ABZR86_RS06930at 1526.159 kb on + strand, within ABZR86_RS06930at 1526.159 kb on + strand, within ABZR86_RS06930at 1526.160 kb on - strand, within ABZR86_RS06930at 1526.160 kb on - strand, within ABZR86_RS06930at 1526.160 kb on - strand, within ABZR86_RS06930

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 6 mM
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1,524,035 - +0.5
1,524,219 + +0.1
1,524,220 - +0.3
1,524,220 - -1.1
1,524,220 - -0.1
1,524,251 + +0.1
1,524,252 - +1.0
1,524,315 + ABZR86_RS06915 0.10 -0.3
1,524,316 - ABZR86_RS06915 0.11 +0.4
1,524,316 - ABZR86_RS06915 0.11 +0.4
1,524,353 - ABZR86_RS06915 0.21 +0.2
1,524,390 - ABZR86_RS06915 0.31 +0.1
1,524,396 - ABZR86_RS06915 0.32 -0.1
1,524,396 - ABZR86_RS06915 0.32 +0.4
1,524,405 + ABZR86_RS06915 0.35 +0.6
1,524,431 - ABZR86_RS06915 0.42 -0.6
1,524,431 - ABZR86_RS06915 0.42 +0.0
1,524,527 + ABZR86_RS06915 0.68 +0.5
1,524,528 - ABZR86_RS06915 0.68 +0.4
1,524,560 + ABZR86_RS06915 0.77 +0.5
1,524,561 - ABZR86_RS06915 0.77 +0.4
1,524,599 - ABZR86_RS06915 0.87 +0.5
1,524,738 + -0.6
1,524,739 - +0.2
1,524,739 - +0.6
1,524,819 + ABZR86_RS06920 0.13 -0.2
1,524,819 + ABZR86_RS06920 0.13 +0.3
1,524,820 - ABZR86_RS06920 0.13 -0.2
1,524,855 + ABZR86_RS06920 0.20 +0.1
1,524,855 + ABZR86_RS06920 0.20 -0.2
1,524,855 + ABZR86_RS06920 0.20 -0.1
1,524,856 - ABZR86_RS06920 0.21 +0.2
1,524,861 + ABZR86_RS06920 0.22 +0.1
1,524,862 - ABZR86_RS06920 0.22 +0.8
1,524,862 - ABZR86_RS06920 0.22 +0.0
1,525,044 + ABZR86_RS06920 0.61 +0.2
1,525,068 + ABZR86_RS06920 0.66 +0.2
1,525,069 - ABZR86_RS06920 0.67 +0.9
1,525,250 + +0.4
1,525,251 - +0.2
1,525,396 - ABZR86_RS06925 0.15 -0.3
1,525,425 + ABZR86_RS06925 0.20 +1.2
1,525,425 + ABZR86_RS06925 0.20 -0.1
1,525,425 + ABZR86_RS06925 0.20 +0.3
1,525,425 + ABZR86_RS06925 0.20 +1.1
1,525,425 + ABZR86_RS06925 0.20 +0.2
1,525,493 - ABZR86_RS06925 0.32 +0.3
1,525,509 + ABZR86_RS06925 0.35 +0.9
1,525,510 - ABZR86_RS06925 0.35 +0.2
1,525,510 - ABZR86_RS06925 0.35 -0.8
1,525,547 + ABZR86_RS06925 0.41 -0.8
1,525,573 + ABZR86_RS06925 0.46 -0.1
1,525,573 + ABZR86_RS06925 0.46 -0.3
1,525,573 + ABZR86_RS06925 0.46 -0.6
1,525,573 + ABZR86_RS06925 0.46 +0.6
1,525,573 + ABZR86_RS06925 0.46 -0.2
1,525,574 - ABZR86_RS06925 0.46 -0.6
1,525,588 + ABZR86_RS06925 0.49 -0.1
1,525,589 - ABZR86_RS06925 0.49 +0.7
1,525,682 + ABZR86_RS06925 0.65 +0.6
1,525,769 - ABZR86_RS06925 0.80 -0.6
1,525,837 + +0.3
1,525,837 + -0.1
1,525,837 + +0.4
1,525,838 - +0.3
1,525,863 + +0.3
1,525,863 + -0.4
1,525,863 + +0.3
1,525,933 - ABZR86_RS06930 0.10 +0.3
1,525,933 - ABZR86_RS06930 0.10 +0.6
1,525,933 - ABZR86_RS06930 0.10 +0.0
1,526,105 - ABZR86_RS06930 0.50 +0.3
1,526,159 + ABZR86_RS06930 0.63 -0.3
1,526,159 + ABZR86_RS06930 0.63 +0.1
1,526,160 - ABZR86_RS06930 0.63 +0.0
1,526,160 - ABZR86_RS06930 0.63 +0.3
1,526,160 - ABZR86_RS06930 0.63 +1.3

Or see this region's nucleotide sequence