Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05340

Experiment: nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05330 and ABZR86_RS05335 are separated by 275 nucleotidesABZR86_RS05335 and ABZR86_RS05340 are separated by 195 nucleotidesABZR86_RS05340 and ABZR86_RS05345 overlap by 4 nucleotides ABZR86_RS05330: ABZR86_RS05330 - AarF/UbiB family protein, at 1,198,105 to 1,199,748 _RS05330 ABZR86_RS05335: ABZR86_RS05335 - hemerythrin domain-containing protein, at 1,200,024 to 1,200,515 _RS05335 ABZR86_RS05340: ABZR86_RS05340 - HAD family hydrolase, at 1,200,711 to 1,201,427 _RS05340 ABZR86_RS05345: ABZR86_RS05345 - NAD-dependent protein deacetylase, at 1,201,424 to 1,202,266 _RS05345 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -2 -1 0 1 2at 1199.741 kb on + strandat 1199.742 kb on - strandat 1199.742 kb on - strandat 1199.742 kb on - strandat 1200.231 kb on + strand, within ABZR86_RS05335at 1200.231 kb on + strand, within ABZR86_RS05335at 1200.755 kb on + strandat 1200.756 kb on - strandat 1200.765 kb on + strandat 1200.766 kb on - strandat 1200.766 kb on - strandat 1200.766 kb on - strandat 1200.769 kb on - strandat 1200.810 kb on + strand, within ABZR86_RS05340at 1201.180 kb on - strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.300 kb on - strand, within ABZR86_RS05340at 1201.415 kb on + strandat 1201.416 kb on - strandat 1201.416 kb on - strandat 1201.416 kb on - strandat 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.738 kb on - strand, within ABZR86_RS05345at 1201.738 kb on - strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1202.185 kb on + strandat 1202.186 kb on - strandat 1202.258 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.302 kb on + strandat 1202.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 6 mM
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1,199,741 + +0.4
1,199,742 - +0.6
1,199,742 - -0.5
1,199,742 - +0.2
1,200,231 + ABZR86_RS05335 0.42 -1.3
1,200,231 + ABZR86_RS05335 0.42 -1.3
1,200,755 + +0.5
1,200,756 - +0.2
1,200,765 + -0.0
1,200,766 - -0.2
1,200,766 - +0.1
1,200,766 - +0.3
1,200,769 - +0.8
1,200,810 + ABZR86_RS05340 0.14 +0.5
1,201,180 - ABZR86_RS05340 0.65 +0.1
1,201,290 + ABZR86_RS05340 0.81 +0.5
1,201,290 + ABZR86_RS05340 0.81 +0.2
1,201,290 + ABZR86_RS05340 0.81 +0.3
1,201,290 + ABZR86_RS05340 0.81 +0.0
1,201,290 + ABZR86_RS05340 0.81 +0.2
1,201,290 + ABZR86_RS05340 0.81 -0.3
1,201,290 + ABZR86_RS05340 0.81 +0.5
1,201,290 + ABZR86_RS05340 0.81 +2.6
1,201,290 + ABZR86_RS05340 0.81 -0.2
1,201,291 - ABZR86_RS05340 0.81 +0.7
1,201,291 - ABZR86_RS05340 0.81 -1.2
1,201,291 - ABZR86_RS05340 0.81 -0.2
1,201,291 - ABZR86_RS05340 0.81 -1.1
1,201,291 - ABZR86_RS05340 0.81 +1.0
1,201,291 - ABZR86_RS05340 0.81 +0.3
1,201,291 - ABZR86_RS05340 0.81 +1.5
1,201,291 - ABZR86_RS05340 0.81 -0.2
1,201,291 - ABZR86_RS05340 0.81 +0.3
1,201,300 - ABZR86_RS05340 0.82 -0.7
1,201,415 + +0.3
1,201,416 - +1.0
1,201,416 - -0.2
1,201,416 - +0.2
1,201,601 + ABZR86_RS05345 0.21 -0.1
1,201,601 + ABZR86_RS05345 0.21 -2.4
1,201,601 + ABZR86_RS05345 0.21 +0.0
1,201,601 + ABZR86_RS05345 0.21 -0.1
1,201,601 + ABZR86_RS05345 0.21 +0.5
1,201,602 - ABZR86_RS05345 0.21 -0.4
1,201,602 - ABZR86_RS05345 0.21 -0.5
1,201,602 - ABZR86_RS05345 0.21 -0.4
1,201,602 - ABZR86_RS05345 0.21 +0.2
1,201,602 - ABZR86_RS05345 0.21 +0.3
1,201,737 + ABZR86_RS05345 0.37 +0.1
1,201,737 + ABZR86_RS05345 0.37 +0.1
1,201,737 + ABZR86_RS05345 0.37 +0.8
1,201,737 + ABZR86_RS05345 0.37 -0.2
1,201,737 + ABZR86_RS05345 0.37 +0.4
1,201,738 - ABZR86_RS05345 0.37 -0.4
1,201,738 - ABZR86_RS05345 0.37 +0.9
1,201,920 + ABZR86_RS05345 0.59 -0.9
1,201,920 + ABZR86_RS05345 0.59 +0.2
1,201,920 + ABZR86_RS05345 0.59 +0.0
1,201,920 + ABZR86_RS05345 0.59 +0.2
1,201,921 - ABZR86_RS05345 0.59 +0.1
1,201,921 - ABZR86_RS05345 0.59 -0.1
1,201,921 - ABZR86_RS05345 0.59 +0.0
1,201,921 - ABZR86_RS05345 0.59 +0.2
1,202,185 + +0.5
1,202,186 - -0.2
1,202,258 - +0.7
1,202,295 - -0.1
1,202,295 - -0.1
1,202,295 - +0.7
1,202,295 - +1.6
1,202,302 + +1.1
1,202,302 + +0.2

Or see this region's nucleotide sequence