Experiment: nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02520 and ABZR86_RS02525 overlap by 4 nucleotides ABZR86_RS02525 and ABZR86_RS02530 overlap by 1 nucleotides ABZR86_RS02530 and ABZR86_RS02535 overlap by 4 nucleotides ABZR86_RS02535 and ABZR86_RS02540 overlap by 4 nucleotides ABZR86_RS02540 and ABZR86_RS02545 overlap by 4 nucleotides
ABZR86_RS02520: ABZR86_RS02520 - DEAD/DEAH box helicase, at 515,870 to 517,621
_RS02520
ABZR86_RS02525: ABZR86_RS02525 - hypothetical protein, at 517,618 to 518,376
_RS02525
ABZR86_RS02530: ABZR86_RS02530 - hypothetical protein, at 518,376 to 518,795
_RS02530
ABZR86_RS02535: ABZR86_RS02535 - hypothetical protein, at 518,792 to 519,040
_RS02535
ABZR86_RS02540: ABZR86_RS02540 - hypothetical protein, at 519,037 to 519,300
_RS02540
ABZR86_RS02545: ABZR86_RS02545 - Ref family recombination enhancement nuclease, at 519,297 to 519,848
_RS02545
Position (kb) 518
519 Strain fitness (log2 ratio) -1
0
1
2 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.388 kb on + strand, within ABZR86_RS02520 at 517.628 kb on + strand at 517.628 kb on + strand at 517.684 kb on + strand at 517.684 kb on + strand at 517.685 kb on - strand at 517.685 kb on - strand at 517.792 kb on + strand, within ABZR86_RS02525 at 517.792 kb on + strand, within ABZR86_RS02525 at 517.793 kb on - strand, within ABZR86_RS02525 at 517.981 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.016 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.132 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.165 kb on - strand, within ABZR86_RS02525 at 518.375 kb on - strand at 518.394 kb on + strand at 518.487 kb on + strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.488 kb on - strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.535 kb on + strand, within ABZR86_RS02530 at 518.604 kb on + strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.605 kb on - strand, within ABZR86_RS02530 at 518.626 kb on - strand, within ABZR86_RS02530 at 518.787 kb on - strand at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.982 kb on + strand, within ABZR86_RS02535 at 518.983 kb on - strand, within ABZR86_RS02535 at 519.101 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.139 kb on + strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.140 kb on - strand, within ABZR86_RS02540 at 519.150 kb on + strand, within ABZR86_RS02540 at 519.151 kb on - strand, within ABZR86_RS02540 at 519.253 kb on + strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.254 kb on - strand, within ABZR86_RS02540 at 519.366 kb on - strand, within ABZR86_RS02545 at 519.509 kb on + strand, within ABZR86_RS02545 at 519.558 kb on + strand, within ABZR86_RS02545 at 519.705 kb on + strand, within ABZR86_RS02545 at 519.706 kb on - strand, within ABZR86_RS02545 at 519.717 kb on + strand, within ABZR86_RS02545 at 519.717 kb on + strand, within ABZR86_RS02545 at 519.718 kb on - strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.750 kb on + strand, within ABZR86_RS02545 at 519.751 kb on - strand, within ABZR86_RS02545 at 519.751 kb on - strand, within ABZR86_RS02545 at 519.778 kb on - strand, within ABZR86_RS02545 at 519.791 kb on + strand, within ABZR86_RS02545 at 519.791 kb on + strand, within ABZR86_RS02545 at 519.792 kb on - strand, within ABZR86_RS02545 at 519.793 kb on + strand at 519.794 kb on - strand at 519.794 kb on - strand at 519.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 6 mM remove 517,388 + ABZR86_RS02520 0.87 -1.5 517,388 + ABZR86_RS02520 0.87 -0.2 517,388 + ABZR86_RS02520 0.87 -0.4 517,628 + -0.6 517,628 + -0.5 517,684 + -0.3 517,684 + +0.1 517,685 - -0.3 517,685 - -1.0 517,792 + ABZR86_RS02525 0.23 +0.6 517,792 + ABZR86_RS02525 0.23 +0.4 517,793 - ABZR86_RS02525 0.23 +0.1 517,981 - ABZR86_RS02525 0.48 +0.5 518,016 - ABZR86_RS02525 0.52 +1.8 518,016 - ABZR86_RS02525 0.52 -0.0 518,132 - ABZR86_RS02525 0.68 +0.3 518,132 - ABZR86_RS02525 0.68 -0.1 518,165 - ABZR86_RS02525 0.72 +0.4 518,165 - ABZR86_RS02525 0.72 +0.1 518,375 - -0.6 518,394 + +0.3 518,487 + ABZR86_RS02530 0.26 +0.4 518,488 - ABZR86_RS02530 0.27 +0.1 518,488 - ABZR86_RS02530 0.27 -0.6 518,535 + ABZR86_RS02530 0.38 +0.8 518,535 + ABZR86_RS02530 0.38 +0.1 518,604 + ABZR86_RS02530 0.54 -0.5 518,605 - ABZR86_RS02530 0.55 +0.7 518,605 - ABZR86_RS02530 0.55 -0.3 518,626 - ABZR86_RS02530 0.60 +0.3 518,787 - +0.0 518,982 + ABZR86_RS02535 0.76 -1.6 518,982 + ABZR86_RS02535 0.76 +0.1 518,982 + ABZR86_RS02535 0.76 +0.0 518,982 + ABZR86_RS02535 0.76 +0.5 518,982 + ABZR86_RS02535 0.76 -0.2 518,983 - ABZR86_RS02535 0.77 +0.6 519,101 + ABZR86_RS02540 0.24 +0.2 519,139 + ABZR86_RS02540 0.39 +0.0 519,139 + ABZR86_RS02540 0.39 +0.2 519,139 + ABZR86_RS02540 0.39 +0.5 519,139 + ABZR86_RS02540 0.39 -0.2 519,139 + ABZR86_RS02540 0.39 +0.0 519,140 - ABZR86_RS02540 0.39 -0.1 519,140 - ABZR86_RS02540 0.39 -0.8 519,140 - ABZR86_RS02540 0.39 -0.5 519,140 - ABZR86_RS02540 0.39 -0.1 519,150 + ABZR86_RS02540 0.43 -0.7 519,151 - ABZR86_RS02540 0.43 -0.2 519,253 + ABZR86_RS02540 0.82 +0.4 519,254 - ABZR86_RS02540 0.82 -0.2 519,254 - ABZR86_RS02540 0.82 +0.6 519,254 - ABZR86_RS02540 0.82 +0.4 519,254 - ABZR86_RS02540 0.82 -0.1 519,254 - ABZR86_RS02540 0.82 -0.5 519,366 - ABZR86_RS02545 0.12 +0.4 519,509 + ABZR86_RS02545 0.38 +0.6 519,558 + ABZR86_RS02545 0.47 +0.7 519,705 + ABZR86_RS02545 0.74 +0.1 519,706 - ABZR86_RS02545 0.74 +1.0 519,717 + ABZR86_RS02545 0.76 -0.0 519,717 + ABZR86_RS02545 0.76 -0.1 519,718 - ABZR86_RS02545 0.76 -0.2 519,750 + ABZR86_RS02545 0.82 -0.3 519,750 + ABZR86_RS02545 0.82 -0.4 519,750 + ABZR86_RS02545 0.82 -0.7 519,750 + ABZR86_RS02545 0.82 -0.9 519,751 - ABZR86_RS02545 0.82 -0.4 519,751 - ABZR86_RS02545 0.82 +0.1 519,778 - ABZR86_RS02545 0.87 +0.1 519,791 + ABZR86_RS02545 0.89 -0.7 519,791 + ABZR86_RS02545 0.89 -0.1 519,792 - ABZR86_RS02545 0.90 +0.3 519,793 + +0.2 519,794 - +0.3 519,794 - +0.5 519,794 - +0.3
Or see this region's nucleotide sequence