Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01610

Experiment: nitrite 6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01600 and ABZR86_RS01605 are separated by 28 nucleotidesABZR86_RS01605 and ABZR86_RS01610 are separated by 65 nucleotidesABZR86_RS01610 and ABZR86_RS01615 are separated by 196 nucleotides ABZR86_RS01600: ABZR86_RS01600 - carboxymuconolactone decarboxylase family protein, at 345,357 to 345,836 _RS01600 ABZR86_RS01605: ABZR86_RS01605 - cupin domain-containing protein, at 345,865 to 346,281 _RS01605 ABZR86_RS01610: ABZR86_RS01610 - RNA polymerase sigma-70 factor, at 346,347 to 347,249 _RS01610 ABZR86_RS01615: ABZR86_RS01615 - hypothetical protein, at 347,446 to 348,327 _RS01615 Position (kb) 346 347 348Strain fitness (log2 ratio) -1 0 1at 345.352 kb on - strandat 345.352 kb on - strandat 345.564 kb on + strand, within ABZR86_RS01600at 345.564 kb on + strand, within ABZR86_RS01600at 345.564 kb on + strand, within ABZR86_RS01600at 345.564 kb on + strand, within ABZR86_RS01600at 345.678 kb on + strand, within ABZR86_RS01600at 345.679 kb on - strand, within ABZR86_RS01600at 345.729 kb on + strand, within ABZR86_RS01600at 345.729 kb on + strand, within ABZR86_RS01600at 346.087 kb on + strand, within ABZR86_RS01605at 346.087 kb on + strand, within ABZR86_RS01605at 346.088 kb on - strand, within ABZR86_RS01605at 346.155 kb on + strand, within ABZR86_RS01605at 346.155 kb on + strand, within ABZR86_RS01605at 346.156 kb on - strand, within ABZR86_RS01605at 346.156 kb on - strand, within ABZR86_RS01605at 346.156 kb on - strand, within ABZR86_RS01605at 346.159 kb on + strand, within ABZR86_RS01605at 346.159 kb on + strand, within ABZR86_RS01605at 346.159 kb on + strand, within ABZR86_RS01605at 346.160 kb on - strand, within ABZR86_RS01605at 346.162 kb on + strand, within ABZR86_RS01605at 346.162 kb on + strand, within ABZR86_RS01605at 346.162 kb on + strand, within ABZR86_RS01605at 346.162 kb on + strand, within ABZR86_RS01605at 346.162 kb on + strand, within ABZR86_RS01605at 346.163 kb on - strand, within ABZR86_RS01605at 346.163 kb on - strand, within ABZR86_RS01605at 346.163 kb on - strand, within ABZR86_RS01605at 346.185 kb on + strand, within ABZR86_RS01605at 346.185 kb on + strand, within ABZR86_RS01605at 346.185 kb on + strand, within ABZR86_RS01605at 346.297 kb on - strandat 346.297 kb on - strandat 346.329 kb on + strandat 346.329 kb on + strandat 346.329 kb on + strandat 346.330 kb on - strandat 346.487 kb on - strand, within ABZR86_RS01610at 346.847 kb on - strand, within ABZR86_RS01610at 347.014 kb on + strand, within ABZR86_RS01610at 347.014 kb on + strand, within ABZR86_RS01610at 347.014 kb on + strand, within ABZR86_RS01610at 347.015 kb on - strand, within ABZR86_RS01610at 347.015 kb on - strand, within ABZR86_RS01610at 347.017 kb on + strand, within ABZR86_RS01610at 347.018 kb on - strand, within ABZR86_RS01610at 347.186 kb on - strandat 347.267 kb on - strandat 347.267 kb on - strandat 347.380 kb on - strandat 347.422 kb on + strandat 347.488 kb on + strandat 347.489 kb on - strandat 347.508 kb on + strandat 347.509 kb on - strandat 347.537 kb on - strand, within ABZR86_RS01615at 347.537 kb on - strand, within ABZR86_RS01615at 347.575 kb on + strand, within ABZR86_RS01615at 347.576 kb on - strand, within ABZR86_RS01615at 347.576 kb on - strand, within ABZR86_RS01615at 347.902 kb on + strand, within ABZR86_RS01615at 347.902 kb on + strand, within ABZR86_RS01615at 347.903 kb on - strand, within ABZR86_RS01615at 347.903 kb on - strand, within ABZR86_RS01615at 347.926 kb on + strand, within ABZR86_RS01615at 347.927 kb on - strand, within ABZR86_RS01615at 348.002 kb on - strand, within ABZR86_RS01615at 348.185 kb on - strand, within ABZR86_RS01615

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite 6 mM
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345,352 - +1.2
345,352 - -0.3
345,564 + ABZR86_RS01600 0.43 -0.2
345,564 + ABZR86_RS01600 0.43 +0.4
345,564 + ABZR86_RS01600 0.43 -0.1
345,564 + ABZR86_RS01600 0.43 -0.2
345,678 + ABZR86_RS01600 0.67 +0.4
345,679 - ABZR86_RS01600 0.67 +0.2
345,729 + ABZR86_RS01600 0.78 +0.0
345,729 + ABZR86_RS01600 0.78 -0.1
346,087 + ABZR86_RS01605 0.53 +0.1
346,087 + ABZR86_RS01605 0.53 +0.1
346,088 - ABZR86_RS01605 0.53 +0.1
346,155 + ABZR86_RS01605 0.70 -0.0
346,155 + ABZR86_RS01605 0.70 +0.8
346,156 - ABZR86_RS01605 0.70 -0.7
346,156 - ABZR86_RS01605 0.70 +0.2
346,156 - ABZR86_RS01605 0.70 +1.5
346,159 + ABZR86_RS01605 0.71 +0.3
346,159 + ABZR86_RS01605 0.71 -0.0
346,159 + ABZR86_RS01605 0.71 -0.1
346,160 - ABZR86_RS01605 0.71 +0.3
346,162 + ABZR86_RS01605 0.71 +0.0
346,162 + ABZR86_RS01605 0.71 +1.2
346,162 + ABZR86_RS01605 0.71 -0.3
346,162 + ABZR86_RS01605 0.71 +0.6
346,162 + ABZR86_RS01605 0.71 -0.3
346,163 - ABZR86_RS01605 0.71 -0.8
346,163 - ABZR86_RS01605 0.71 -0.3
346,163 - ABZR86_RS01605 0.71 -0.4
346,185 + ABZR86_RS01605 0.77 +0.9
346,185 + ABZR86_RS01605 0.77 -0.9
346,185 + ABZR86_RS01605 0.77 -0.1
346,297 - +0.3
346,297 - +0.4
346,329 + -1.1
346,329 + +0.1
346,329 + +0.7
346,330 - -0.0
346,487 - ABZR86_RS01610 0.16 +0.0
346,847 - ABZR86_RS01610 0.55 +0.2
347,014 + ABZR86_RS01610 0.74 +0.3
347,014 + ABZR86_RS01610 0.74 -0.0
347,014 + ABZR86_RS01610 0.74 +0.4
347,015 - ABZR86_RS01610 0.74 +0.8
347,015 - ABZR86_RS01610 0.74 +0.3
347,017 + ABZR86_RS01610 0.74 -0.5
347,018 - ABZR86_RS01610 0.74 +0.2
347,186 - +0.3
347,267 - -0.5
347,267 - +0.3
347,380 - -0.2
347,422 + -0.5
347,488 + +0.4
347,489 - +0.3
347,508 + +1.1
347,509 - +0.2
347,537 - ABZR86_RS01615 0.10 +0.2
347,537 - ABZR86_RS01615 0.10 +0.5
347,575 + ABZR86_RS01615 0.15 -0.0
347,576 - ABZR86_RS01615 0.15 -0.3
347,576 - ABZR86_RS01615 0.15 -0.2
347,902 + ABZR86_RS01615 0.52 +0.3
347,902 + ABZR86_RS01615 0.52 -0.4
347,903 - ABZR86_RS01615 0.52 -0.1
347,903 - ABZR86_RS01615 0.52 -0.1
347,926 + ABZR86_RS01615 0.54 -0.1
347,927 - ABZR86_RS01615 0.55 -0.5
348,002 - ABZR86_RS01615 0.63 +0.1
348,185 - ABZR86_RS01615 0.84 +0.2

Or see this region's nucleotide sequence