Experiment: nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00290 and ABZR86_RS00295 are separated by 174 nucleotides ABZR86_RS00295 and ABZR86_RS00300 are separated by 13 nucleotides
ABZR86_RS00290: ABZR86_RS00290 - CocE/NonD family hydrolase, at 53,209 to 55,146
_RS00290
ABZR86_RS00295: ABZR86_RS00295 - GyrI-like domain-containing protein, at 55,321 to 55,464
_RS00295
ABZR86_RS00300: ABZR86_RS00300 - DUF3772 domain-containing protein, at 55,478 to 57,922
_RS00300
Position (kb) 55
56 Strain fitness (log2 ratio) -1
0
1 at 54.366 kb on - strand, within ABZR86_RS00290 at 54.411 kb on - strand, within ABZR86_RS00290 at 54.467 kb on + strand, within ABZR86_RS00290 at 54.609 kb on - strand, within ABZR86_RS00290 at 54.746 kb on + strand, within ABZR86_RS00290 at 54.746 kb on + strand, within ABZR86_RS00290 at 54.765 kb on - strand, within ABZR86_RS00290 at 54.797 kb on + strand, within ABZR86_RS00290 at 54.887 kb on + strand, within ABZR86_RS00290 at 54.887 kb on + strand, within ABZR86_RS00290 at 54.887 kb on + strand, within ABZR86_RS00290 at 54.888 kb on - strand, within ABZR86_RS00290 at 54.888 kb on - strand, within ABZR86_RS00290 at 54.948 kb on + strand, within ABZR86_RS00290 at 54.949 kb on - strand, within ABZR86_RS00290 at 54.998 kb on + strand at 54.999 kb on - strand at 54.999 kb on - strand at 54.999 kb on - strand at 54.999 kb on - strand at 54.999 kb on - strand at 55.261 kb on + strand at 55.668 kb on + strand at 55.668 kb on + strand at 55.668 kb on + strand at 55.669 kb on - strand at 55.669 kb on - strand at 55.669 kb on - strand at 55.669 kb on - strand at 55.669 kb on - strand at 56.173 kb on - strand, within ABZR86_RS00300
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 6 mM remove 54,366 - ABZR86_RS00290 0.60 +0.5 54,411 - ABZR86_RS00290 0.62 +0.6 54,467 + ABZR86_RS00290 0.65 +1.4 54,609 - ABZR86_RS00290 0.72 +0.3 54,746 + ABZR86_RS00290 0.79 +0.2 54,746 + ABZR86_RS00290 0.79 -1.1 54,765 - ABZR86_RS00290 0.80 -0.4 54,797 + ABZR86_RS00290 0.82 +0.1 54,887 + ABZR86_RS00290 0.87 +0.2 54,887 + ABZR86_RS00290 0.87 +1.1 54,887 + ABZR86_RS00290 0.87 +0.1 54,888 - ABZR86_RS00290 0.87 +0.5 54,888 - ABZR86_RS00290 0.87 -1.2 54,948 + ABZR86_RS00290 0.90 -0.2 54,949 - ABZR86_RS00290 0.90 +0.2 54,998 + +0.7 54,999 - +0.5 54,999 - +0.2 54,999 - -0.1 54,999 - -0.2 54,999 - +0.4 55,261 + +0.1 55,668 + +0.3 55,668 + -0.8 55,668 + +0.4 55,669 - -1.1 55,669 - -0.2 55,669 - +0.1 55,669 - +0.2 55,669 - +0.0 56,173 - ABZR86_RS00300 0.28 -0.3
Or see this region's nucleotide sequence