Experiment: nitrite 6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00250 and ABZR86_RS00255 are separated by 189 nucleotides ABZR86_RS00255 and ABZR86_RS00260 are separated by 135 nucleotides
ABZR86_RS00250: ABZR86_RS00250 - HDOD domain-containing protein, at 43,885 to 44,934
_RS00250
ABZR86_RS00255: ABZR86_RS00255 - LLM class flavin-dependent oxidoreductase, at 45,124 to 46,122
_RS00255
ABZR86_RS00260: ABZR86_RS00260 - DUF72 domain-containing protein, at 46,258 to 47,088
_RS00260
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.277 kb on + strand, within ABZR86_RS00250 at 44.301 kb on - strand, within ABZR86_RS00250 at 44.301 kb on - strand, within ABZR86_RS00250 at 44.528 kb on + strand, within ABZR86_RS00250 at 44.529 kb on - strand, within ABZR86_RS00250 at 44.529 kb on - strand, within ABZR86_RS00250 at 44.529 kb on - strand, within ABZR86_RS00250 at 44.924 kb on - strand at 44.924 kb on - strand at 44.930 kb on + strand at 44.930 kb on + strand at 44.931 kb on - strand at 44.931 kb on - strand at 45.241 kb on + strand, within ABZR86_RS00255 at 45.241 kb on + strand, within ABZR86_RS00255 at 45.309 kb on + strand, within ABZR86_RS00255 at 45.493 kb on + strand, within ABZR86_RS00255 at 45.494 kb on - strand, within ABZR86_RS00255 at 45.541 kb on + strand, within ABZR86_RS00255 at 45.541 kb on + strand, within ABZR86_RS00255 at 45.668 kb on - strand, within ABZR86_RS00255 at 45.722 kb on - strand, within ABZR86_RS00255 at 45.908 kb on - strand, within ABZR86_RS00255 at 46.075 kb on + strand at 46.075 kb on + strand at 46.076 kb on - strand at 46.219 kb on + strand at 46.220 kb on - strand at 46.220 kb on - strand at 46.220 kb on - strand at 46.220 kb on - strand at 46.332 kb on - strand at 46.499 kb on + strand, within ABZR86_RS00260 at 46.500 kb on - strand, within ABZR86_RS00260 at 46.552 kb on - strand, within ABZR86_RS00260 at 46.553 kb on + strand, within ABZR86_RS00260 at 46.554 kb on - strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.592 kb on + strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.593 kb on - strand, within ABZR86_RS00260 at 46.830 kb on - strand, within ABZR86_RS00260 at 46.889 kb on + strand, within ABZR86_RS00260 at 46.916 kb on + strand, within ABZR86_RS00260 at 46.916 kb on + strand, within ABZR86_RS00260 at 46.916 kb on + strand, within ABZR86_RS00260 at 46.917 kb on - strand, within ABZR86_RS00260 at 46.917 kb on - strand, within ABZR86_RS00260 at 46.917 kb on - strand, within ABZR86_RS00260 at 46.958 kb on + strand, within ABZR86_RS00260 at 46.959 kb on - strand, within ABZR86_RS00260 at 47.018 kb on + strand at 47.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite 6 mM remove 44,277 + ABZR86_RS00250 0.37 +0.8 44,301 - ABZR86_RS00250 0.40 +0.1 44,301 - ABZR86_RS00250 0.40 +0.6 44,528 + ABZR86_RS00250 0.61 -0.3 44,529 - ABZR86_RS00250 0.61 +0.5 44,529 - ABZR86_RS00250 0.61 -1.4 44,529 - ABZR86_RS00250 0.61 -0.3 44,924 - -0.3 44,924 - -0.3 44,930 + +0.7 44,930 + -0.2 44,931 - +0.2 44,931 - -0.4 45,241 + ABZR86_RS00255 0.12 -0.2 45,241 + ABZR86_RS00255 0.12 +0.3 45,309 + ABZR86_RS00255 0.19 +0.2 45,493 + ABZR86_RS00255 0.37 +0.2 45,494 - ABZR86_RS00255 0.37 +1.0 45,541 + ABZR86_RS00255 0.42 +0.5 45,541 + ABZR86_RS00255 0.42 -1.0 45,668 - ABZR86_RS00255 0.54 +0.2 45,722 - ABZR86_RS00255 0.60 +0.1 45,908 - ABZR86_RS00255 0.78 -0.4 46,075 + -0.5 46,075 + -0.3 46,076 - +1.0 46,219 + +0.4 46,220 - -0.2 46,220 - +0.5 46,220 - +0.3 46,220 - -0.1 46,332 - +0.1 46,499 + ABZR86_RS00260 0.29 -0.1 46,500 - ABZR86_RS00260 0.29 -0.2 46,552 - ABZR86_RS00260 0.35 +0.5 46,553 + ABZR86_RS00260 0.35 +1.5 46,554 - ABZR86_RS00260 0.36 +0.2 46,592 + ABZR86_RS00260 0.40 +0.6 46,592 + ABZR86_RS00260 0.40 -0.2 46,592 + ABZR86_RS00260 0.40 -0.1 46,592 + ABZR86_RS00260 0.40 -0.5 46,592 + ABZR86_RS00260 0.40 -0.8 46,593 - ABZR86_RS00260 0.40 -1.2 46,593 - ABZR86_RS00260 0.40 +0.5 46,593 - ABZR86_RS00260 0.40 +0.5 46,593 - ABZR86_RS00260 0.40 -1.0 46,593 - ABZR86_RS00260 0.40 +0.3 46,830 - ABZR86_RS00260 0.69 +0.4 46,889 + ABZR86_RS00260 0.76 -0.1 46,916 + ABZR86_RS00260 0.79 -0.3 46,916 + ABZR86_RS00260 0.79 +0.2 46,916 + ABZR86_RS00260 0.79 +0.0 46,917 - ABZR86_RS00260 0.79 +0.5 46,917 - ABZR86_RS00260 0.79 +0.1 46,917 - ABZR86_RS00260 0.79 +0.6 46,958 + ABZR86_RS00260 0.84 +0.0 46,959 - ABZR86_RS00260 0.84 +0.1 47,018 + +0.3 47,019 - -0.3
Or see this region's nucleotide sequence