Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2812

Experiment: MoYLS4 with benzoic 0.8 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2811 and DvMF_2812 are separated by 264 nucleotidesDvMF_2812 and DvMF_2813 are separated by 425 nucleotides DvMF_2811: DvMF_2811 - pyridoxamine kinase (RefSeq), at 3,554,232 to 3,555,125 _2811 DvMF_2812: DvMF_2812 - protein of unknown function DUF81 (RefSeq), at 3,555,390 to 3,556,343 _2812 DvMF_2813: DvMF_2813 - TOBE domain protein (RefSeq), at 3,556,769 to 3,557,857 _2813 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -3 -2 -1 0 1at 3554.523 kb on + strand, within DvMF_2811at 3554.717 kb on + strand, within DvMF_2811at 3554.786 kb on + strand, within DvMF_2811at 3554.880 kb on + strand, within DvMF_2811at 3554.969 kb on - strand, within DvMF_2811at 3555.021 kb on - strand, within DvMF_2811at 3555.127 kb on + strandat 3555.128 kb on - strandat 3555.144 kb on + strandat 3555.146 kb on + strandat 3555.154 kb on - strandat 3555.285 kb on + strandat 3555.505 kb on - strand, within DvMF_2812at 3555.644 kb on - strand, within DvMF_2812at 3555.644 kb on - strand, within DvMF_2812at 3555.995 kb on - strand, within DvMF_2812at 3556.106 kb on - strand, within DvMF_2812at 3556.194 kb on + strand, within DvMF_2812at 3556.204 kb on - strand, within DvMF_2812at 3556.440 kb on - strandat 3556.643 kb on + strandat 3556.643 kb on + strandat 3556.651 kb on - strandat 3556.803 kb on - strandat 3557.293 kb on + strand, within DvMF_2813at 3557.306 kb on - strand, within DvMF_2813

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml
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3,554,523 + DvMF_2811 0.33 -1.6
3,554,717 + DvMF_2811 0.54 -1.1
3,554,786 + DvMF_2811 0.62 -2.9
3,554,880 + DvMF_2811 0.72 -2.5
3,554,969 - DvMF_2811 0.82 -1.6
3,555,021 - DvMF_2811 0.88 -1.5
3,555,127 + -0.3
3,555,128 - -0.2
3,555,144 + -0.3
3,555,146 + -0.2
3,555,154 - -0.7
3,555,285 + -0.3
3,555,505 - DvMF_2812 0.12 -0.3
3,555,644 - DvMF_2812 0.27 -0.2
3,555,644 - DvMF_2812 0.27 -0.3
3,555,995 - DvMF_2812 0.63 -0.5
3,556,106 - DvMF_2812 0.75 +0.1
3,556,194 + DvMF_2812 0.84 -0.2
3,556,204 - DvMF_2812 0.85 -0.8
3,556,440 - -0.1
3,556,643 + -0.2
3,556,643 + -0.0
3,556,651 - -0.0
3,556,803 - -0.4
3,557,293 + DvMF_2813 0.48 -0.5
3,557,306 - DvMF_2813 0.49 -0.5

Or see this region's nucleotide sequence