Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2625

Experiment: MoYLS4 with benzoic 0.8 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2624 and DvMF_2625 are separated by 247 nucleotidesDvMF_2625 and DvMF_2626 are separated by 50 nucleotides DvMF_2624: DvMF_2624 - acetolactate synthase, small subunit (RefSeq), at 3,314,777 to 3,315,259 _2624 DvMF_2625: DvMF_2625 - Phosphate butyryltransferase (RefSeq), at 3,315,507 to 3,316,481 _2625 DvMF_2626: DvMF_2626 - butyrate kinase (RefSeq), at 3,316,532 to 3,317,893 _2626 Position (kb) 3315 3316 3317Strain fitness (log2 ratio) -1 0 1at 3314.547 kb on - strandat 3314.547 kb on - strandat 3315.001 kb on - strand, within DvMF_2624at 3315.040 kb on + strand, within DvMF_2624at 3315.227 kb on - strandat 3315.353 kb on + strandat 3315.353 kb on + strandat 3315.383 kb on + strandat 3315.420 kb on + strandat 3315.465 kb on - strandat 3315.710 kb on + strand, within DvMF_2625at 3315.737 kb on + strand, within DvMF_2625at 3315.783 kb on - strand, within DvMF_2625at 3315.792 kb on + strand, within DvMF_2625at 3316.323 kb on - strand, within DvMF_2625at 3316.384 kb on - strandat 3316.485 kb on + strandat 3316.597 kb on - strandat 3316.775 kb on + strand, within DvMF_2626at 3316.982 kb on - strand, within DvMF_2626at 3317.099 kb on - strand, within DvMF_2626at 3317.132 kb on - strand, within DvMF_2626

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml
remove
3,314,547 - -0.3
3,314,547 - -0.2
3,315,001 - DvMF_2624 0.46 +0.1
3,315,040 + DvMF_2624 0.54 -0.3
3,315,227 - -0.0
3,315,353 + -0.5
3,315,353 + -0.3
3,315,383 + +0.2
3,315,420 + -0.3
3,315,465 - +0.5
3,315,710 + DvMF_2625 0.21 -0.3
3,315,737 + DvMF_2625 0.24 -0.2
3,315,783 - DvMF_2625 0.28 -0.4
3,315,792 + DvMF_2625 0.29 -0.8
3,316,323 - DvMF_2625 0.84 +0.1
3,316,384 - +0.4
3,316,485 + -0.5
3,316,597 - +0.3
3,316,775 + DvMF_2626 0.18 +0.4
3,316,982 - DvMF_2626 0.33 +0.4
3,317,099 - DvMF_2626 0.42 +0.0
3,317,132 - DvMF_2626 0.44 -0.4

Or see this region's nucleotide sequence