Experiment: MoYLS4 with benzoic 0.8 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2536 and DvMF_2537 are separated by 10 nucleotides DvMF_2537 and DvMF_2538 are separated by 342 nucleotides DvMF_2538 and DvMF_2539 are separated by 296 nucleotides
DvMF_2536: DvMF_2536 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,201,285 to 3,202,718
_2536
DvMF_2537: DvMF_2537 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,202,729 to 3,206,397
_2537
DvMF_2538: DvMF_2538 - hypothetical protein (RefSeq), at 3,206,740 to 3,207,027
_2538
DvMF_2539: DvMF_2539 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,207,324 to 3,209,369
_2539
Position (kb) 3202
3203
3204
3205
3206
3207 Strain fitness (log2 ratio) -1
0
1 at 3202.132 kb on - strand, within DvMF_2536 at 3202.134 kb on + strand, within DvMF_2536 at 3202.142 kb on - strand, within DvMF_2536 at 3202.142 kb on - strand, within DvMF_2536 at 3202.299 kb on + strand, within DvMF_2536 at 3202.312 kb on + strand, within DvMF_2536 at 3202.329 kb on + strand, within DvMF_2536 at 3202.540 kb on - strand, within DvMF_2536 at 3202.805 kb on - strand at 3202.910 kb on - strand at 3202.993 kb on + strand at 3203.046 kb on + strand at 3203.269 kb on - strand, within DvMF_2537 at 3203.285 kb on - strand, within DvMF_2537 at 3203.363 kb on - strand, within DvMF_2537 at 3203.400 kb on + strand, within DvMF_2537 at 3203.617 kb on - strand, within DvMF_2537 at 3203.652 kb on - strand, within DvMF_2537 at 3204.072 kb on + strand, within DvMF_2537 at 3204.080 kb on - strand, within DvMF_2537 at 3204.086 kb on + strand, within DvMF_2537 at 3204.103 kb on + strand, within DvMF_2537 at 3204.214 kb on - strand, within DvMF_2537 at 3204.567 kb on - strand, within DvMF_2537 at 3204.741 kb on + strand, within DvMF_2537 at 3204.759 kb on + strand at 3204.759 kb on + strand, within DvMF_2537 at 3204.759 kb on + strand, within DvMF_2537 at 3204.767 kb on - strand, within DvMF_2537 at 3204.856 kb on + strand, within DvMF_2537 at 3204.856 kb on + strand, within DvMF_2537 at 3204.864 kb on - strand, within DvMF_2537 at 3204.988 kb on + strand, within DvMF_2537 at 3205.041 kb on - strand, within DvMF_2537 at 3205.316 kb on - strand, within DvMF_2537 at 3205.435 kb on + strand, within DvMF_2537 at 3205.504 kb on + strand, within DvMF_2537 at 3206.254 kb on - strand at 3206.361 kb on + strand at 3206.834 kb on + strand, within DvMF_2538 at 3206.837 kb on - strand, within DvMF_2538 at 3206.881 kb on - strand, within DvMF_2538 at 3206.918 kb on + strand, within DvMF_2538 at 3207.062 kb on - strand at 3207.082 kb on + strand at 3207.178 kb on - strand at 3207.192 kb on + strand at 3207.200 kb on - strand at 3207.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml remove 3,202,132 - DvMF_2536 0.59 +0.1 3,202,134 + DvMF_2536 0.59 +0.1 3,202,142 - DvMF_2536 0.60 +0.1 3,202,142 - DvMF_2536 0.60 +0.4 3,202,299 + DvMF_2536 0.71 +0.5 3,202,312 + DvMF_2536 0.72 +0.1 3,202,329 + DvMF_2536 0.73 +0.3 3,202,540 - DvMF_2536 0.88 -0.1 3,202,805 - +0.0 3,202,910 - +0.3 3,202,993 + +0.2 3,203,046 + +0.3 3,203,269 - DvMF_2537 0.15 +0.1 3,203,285 - DvMF_2537 0.15 +0.1 3,203,363 - DvMF_2537 0.17 -0.2 3,203,400 + DvMF_2537 0.18 +0.1 3,203,617 - DvMF_2537 0.24 +0.1 3,203,652 - DvMF_2537 0.25 +0.5 3,204,072 + DvMF_2537 0.37 +0.9 3,204,080 - DvMF_2537 0.37 +0.0 3,204,086 + DvMF_2537 0.37 +0.3 3,204,103 + DvMF_2537 0.37 +0.4 3,204,214 - DvMF_2537 0.40 +0.3 3,204,567 - DvMF_2537 0.50 +0.2 3,204,741 + DvMF_2537 0.55 -0.0 3,204,759 + +0.4 3,204,759 + DvMF_2537 0.55 -0.1 3,204,759 + DvMF_2537 0.55 +0.3 3,204,767 - DvMF_2537 0.56 -0.3 3,204,856 + DvMF_2537 0.58 +0.3 3,204,856 + DvMF_2537 0.58 +0.1 3,204,864 - DvMF_2537 0.58 -0.0 3,204,988 + DvMF_2537 0.62 -0.6 3,205,041 - DvMF_2537 0.63 +0.3 3,205,316 - DvMF_2537 0.71 -0.0 3,205,435 + DvMF_2537 0.74 +0.1 3,205,504 + DvMF_2537 0.76 -0.0 3,206,254 - +0.0 3,206,361 + +1.0 3,206,834 + DvMF_2538 0.33 +0.1 3,206,837 - DvMF_2538 0.34 +0.4 3,206,881 - DvMF_2538 0.49 +0.1 3,206,918 + DvMF_2538 0.62 -0.2 3,207,062 - -0.3 3,207,082 + -0.3 3,207,178 - -0.7 3,207,192 + -0.5 3,207,200 - -0.8 3,207,363 - -0.5
Or see this region's nucleotide sequence