Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2084

Experiment: MoYLS4 with benzoic 0.8 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2083 and DvMF_2084 are separated by 244 nucleotidesDvMF_2084 and DvMF_2085 are separated by 188 nucleotides DvMF_2083: DvMF_2083 - DNA gyrase, B subunit (RefSeq), at 2,591,326 to 2,593,722 _2083 DvMF_2084: DvMF_2084 - DNA gyrase, A subunit (RefSeq), at 2,593,967 to 2,596,405 _2084 DvMF_2085: DvMF_2085 - putative lipoprotein (RefSeq), at 2,596,594 to 2,597,433 _2085 Position (kb) 2593 2594 2595 2596 2597Strain fitness (log2 ratio) -1 0 1at 2596.408 kb on - strandat 2596.819 kb on + strand, within DvMF_2085at 2596.891 kb on + strand, within DvMF_2085at 2597.050 kb on + strand, within DvMF_2085at 2597.138 kb on + strand, within DvMF_2085at 2597.143 kb on + strand, within DvMF_2085

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml
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2,596,408 - +0.3
2,596,819 + DvMF_2085 0.27 -1.2
2,596,891 + DvMF_2085 0.35 -0.5
2,597,050 + DvMF_2085 0.54 -0.1
2,597,138 + DvMF_2085 0.65 -0.3
2,597,143 + DvMF_2085 0.65 -0.1

Or see this region's nucleotide sequence