Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1312

Experiment: MoYLS4 with benzoic 0.8 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1311 and DvMF_1312 are separated by 82 nucleotidesDvMF_1312 and DvMF_1313 are separated by 105 nucleotides DvMF_1311: DvMF_1311 - selenocysteine synthase (RefSeq), at 1,600,841 to 1,602,361 _1311 DvMF_1312: DvMF_1312 - NAD-dependent epimerase/dehydratase (RefSeq), at 1,602,444 to 1,603,436 _1312 DvMF_1313: DvMF_1313 - hypothetical protein (RefSeq), at 1,603,542 to 1,604,411 _1313 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -2 -1 0 1at 1601.886 kb on + strand, within DvMF_1311at 1602.012 kb on + strand, within DvMF_1311at 1602.127 kb on + strand, within DvMF_1311at 1602.299 kb on - strandat 1602.325 kb on + strandat 1602.372 kb on + strandat 1602.407 kb on + strandat 1602.522 kb on - strandat 1602.657 kb on - strand, within DvMF_1312at 1602.657 kb on - strand, within DvMF_1312at 1602.694 kb on + strand, within DvMF_1312at 1602.746 kb on - strand, within DvMF_1312at 1602.787 kb on - strand, within DvMF_1312at 1602.824 kb on + strand, within DvMF_1312at 1602.912 kb on + strand, within DvMF_1312at 1603.438 kb on - strandat 1603.439 kb on - strandat 1603.631 kb on + strand, within DvMF_1313at 1603.690 kb on - strand, within DvMF_1313

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml
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1,601,886 + DvMF_1311 0.69 -1.9
1,602,012 + DvMF_1311 0.77 -2.1
1,602,127 + DvMF_1311 0.85 -1.9
1,602,299 - -0.5
1,602,325 + -0.8
1,602,372 + +0.0
1,602,407 + -0.3
1,602,522 - +0.1
1,602,657 - DvMF_1312 0.21 +0.0
1,602,657 - DvMF_1312 0.21 +0.0
1,602,694 + DvMF_1312 0.25 +0.0
1,602,746 - DvMF_1312 0.30 -0.1
1,602,787 - DvMF_1312 0.35 -0.0
1,602,824 + DvMF_1312 0.38 -0.0
1,602,912 + DvMF_1312 0.47 +0.3
1,603,438 - -0.2
1,603,439 - -0.1
1,603,631 + DvMF_1313 0.10 -0.3
1,603,690 - DvMF_1313 0.17 -0.4

Or see this region's nucleotide sequence