Experiment: MoYLS4 with benzoic 0.8 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1024 and DvMF_1025 are separated by 11 nucleotides DvMF_1025 and DvMF_1026 are separated by 4 nucleotides DvMF_1026 and DvMF_1027 are separated by 26 nucleotides
DvMF_1024: DvMF_1024 - hypothetical protein (RefSeq), at 1,242,732 to 1,244,696
_1024
DvMF_1025: DvMF_1025 - hypothetical protein (RefSeq), at 1,244,708 to 1,245,256
_1025
DvMF_1026: DvMF_1026 - hypothetical protein (RefSeq), at 1,245,261 to 1,245,866
_1026
DvMF_1027: DvMF_1027 - type II and III secretion system protein (RefSeq), at 1,245,893 to 1,247,551
_1027
Position (kb)
1244
1245
1246 Strain fitness (log2 ratio)
-1
0
1 at 1243.748 kb on - strand, within DvMF_1024 at 1243.819 kb on + strand, within DvMF_1024 at 1243.925 kb on + strand, within DvMF_1024 at 1243.952 kb on - strand, within DvMF_1024 at 1243.983 kb on + strand, within DvMF_1024 at 1244.048 kb on + strand, within DvMF_1024 at 1244.304 kb on + strand, within DvMF_1024 at 1244.309 kb on + strand, within DvMF_1024 at 1244.382 kb on + strand, within DvMF_1024 at 1244.418 kb on + strand, within DvMF_1024 at 1244.467 kb on - strand, within DvMF_1024 at 1244.488 kb on - strand, within DvMF_1024 at 1244.488 kb on - strand, within DvMF_1024 at 1244.677 kb on - strand at 1244.780 kb on + strand, within DvMF_1025 at 1244.947 kb on - strand, within DvMF_1025 at 1245.165 kb on - strand, within DvMF_1025 at 1245.500 kb on - strand, within DvMF_1026 at 1245.677 kb on + strand, within DvMF_1026 at 1245.695 kb on - strand, within DvMF_1026 at 1245.721 kb on + strand, within DvMF_1026 at 1245.738 kb on - strand, within DvMF_1026 at 1245.802 kb on - strand, within DvMF_1026 at 1245.917 kb on + strand at 1245.925 kb on - strand at 1245.975 kb on - strand at 1246.133 kb on + strand, within DvMF_1027 at 1246.165 kb on + strand, within DvMF_1027
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml remove 1,243,748 - DvMF_1024 0.52 -0.2 1,243,819 + DvMF_1024 0.55 -0.2 1,243,925 + DvMF_1024 0.61 -0.2 1,243,952 - DvMF_1024 0.62 -0.4 1,243,983 + DvMF_1024 0.64 -0.8 1,244,048 + DvMF_1024 0.67 -0.0 1,244,304 + DvMF_1024 0.80 +0.3 1,244,309 + DvMF_1024 0.80 +0.2 1,244,382 + DvMF_1024 0.84 -0.2 1,244,418 + DvMF_1024 0.86 -1.2 1,244,467 - DvMF_1024 0.88 -0.3 1,244,488 - DvMF_1024 0.89 -0.6 1,244,488 - DvMF_1024 0.89 +0.0 1,244,677 - -1.2 1,244,780 + DvMF_1025 0.13 -0.3 1,244,947 - DvMF_1025 0.44 -0.1 1,245,165 - DvMF_1025 0.83 -0.2 1,245,500 - DvMF_1026 0.39 -0.2 1,245,677 + DvMF_1026 0.69 -0.4 1,245,695 - DvMF_1026 0.72 -0.2 1,245,721 + DvMF_1026 0.76 -0.3 1,245,738 - DvMF_1026 0.79 -0.8 1,245,802 - DvMF_1026 0.89 -0.2 1,245,917 + +0.6 1,245,925 - +0.1 1,245,975 - -0.2 1,246,133 + DvMF_1027 0.14 -0.2 1,246,165 + DvMF_1027 0.16 -0.2
Or see this region's nucleotide sequence