Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0282

Experiment: MoYLS4 with benzoic 0.8 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0281 and DvMF_0282 are separated by 350 nucleotidesDvMF_0282 and DvMF_0283 are separated by 222 nucleotidesDvMF_0283 and DvMF_0284 are separated by 456 nucleotides DvMF_0281: DvMF_0281 - pyridoxine 5'-phosphate synthase (RefSeq), at 321,367 to 322,092 _0281 DvMF_0282: DvMF_0282 - nucleotide sugar dehydrogenase (RefSeq), at 322,443 to 323,780 _0282 DvMF_0283: DvMF_0283 - hypothetical protein (RefSeq), at 324,003 to 324,227 _0283 DvMF_0284: DvMF_0284 - CheW protein (RefSeq), at 324,684 to 325,160 _0284 Position (kb) 322 323 324Strain fitness (log2 ratio) -1 0 1at 321.575 kb on + strand, within DvMF_0281at 321.594 kb on + strand, within DvMF_0281at 321.640 kb on - strand, within DvMF_0281at 321.752 kb on + strand, within DvMF_0281at 321.774 kb on + strand, within DvMF_0281at 322.153 kb on + strandat 322.261 kb on + strandat 323.773 kb on + strandat 324.390 kb on - strandat 324.416 kb on - strandat 324.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml
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321,575 + DvMF_0281 0.29 -0.3
321,594 + DvMF_0281 0.31 -0.7
321,640 - DvMF_0281 0.38 -0.4
321,752 + DvMF_0281 0.53 -0.9
321,774 + DvMF_0281 0.56 -0.3
322,153 + -0.5
322,261 + -0.1
323,773 + -0.4
324,390 - +0.3
324,416 - +0.0
324,563 - +0.0

Or see this region's nucleotide sequence