Experiment: MoYLS4 with benzoic 0.8 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0237 and DvMF_0238 are separated by 342 nucleotides DvMF_0238 and DvMF_0239 are separated by 221 nucleotides DvMF_0239 and DvMF_0240 are separated by 245 nucleotides DvMF_0240 and DvMF_0241 are separated by 87 nucleotides
DvMF_0237: DvMF_0237 - putative CheA signal transduction histidine kinase (RefSeq), at 266,347 to 268,356
_0237
DvMF_0238: DvMF_0238 - hypothetical protein (RefSeq), at 268,699 to 268,971
_0238
DvMF_0239: DvMF_0239 - Beta tubulin, autoregulation binding site (RefSeq), at 269,193 to 271,886
_0239
DvMF_0240: DvMF_0240 - hypothetical protein (RefSeq), at 272,132 to 272,500
_0240
DvMF_0241: DvMF_0241 - major facilitator superfamily MFS_1 (RefSeq), at 272,588 to 273,805
_0241
Position (kb) 269
270
271
272 Strain fitness (log2 ratio) -1
0
1 at 268.439 kb on + strand at 268.447 kb on - strand at 268.457 kb on - strand at 268.459 kb on - strand at 268.479 kb on + strand at 268.503 kb on - strand at 268.532 kb on - strand at 268.624 kb on + strand at 268.658 kb on - strand at 268.904 kb on - strand, within DvMF_0238 at 269.303 kb on + strand at 269.308 kb on + strand at 269.356 kb on - strand at 269.364 kb on - strand at 269.495 kb on + strand, within DvMF_0239 at 269.503 kb on - strand, within DvMF_0239 at 269.674 kb on + strand, within DvMF_0239 at 269.777 kb on + strand, within DvMF_0239 at 269.824 kb on + strand, within DvMF_0239 at 270.355 kb on - strand, within DvMF_0239 at 270.497 kb on + strand, within DvMF_0239 at 270.513 kb on + strand, within DvMF_0239 at 270.661 kb on - strand, within DvMF_0239 at 271.018 kb on + strand, within DvMF_0239 at 271.058 kb on - strand, within DvMF_0239 at 271.058 kb on - strand, within DvMF_0239 at 271.058 kb on - strand, within DvMF_0239 at 271.069 kb on + strand, within DvMF_0239 at 271.130 kb on + strand, within DvMF_0239 at 271.134 kb on + strand, within DvMF_0239 at 271.195 kb on - strand, within DvMF_0239 at 271.198 kb on + strand, within DvMF_0239 at 271.261 kb on - strand, within DvMF_0239 at 271.374 kb on + strand, within DvMF_0239 at 271.489 kb on + strand, within DvMF_0239 at 271.586 kb on - strand, within DvMF_0239 at 271.683 kb on + strand at 271.725 kb on + strand at 271.796 kb on + strand at 271.796 kb on + strand at 271.796 kb on + strand at 271.804 kb on - strand at 271.804 kb on - strand at 271.804 kb on - strand at 271.804 kb on - strand at 271.855 kb on + strand at 271.863 kb on - strand at 271.869 kb on + strand at 271.869 kb on + strand at 272.028 kb on - strand at 272.182 kb on - strand, within DvMF_0240 at 272.396 kb on + strand, within DvMF_0240 at 272.396 kb on + strand, within DvMF_0240 at 272.636 kb on - strand at 272.656 kb on + strand at 272.800 kb on - strand, within DvMF_0241
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with benzoic 0.8 mg/ml remove 268,439 + +0.8 268,447 - +0.1 268,457 - -0.4 268,459 - +0.2 268,479 + -0.3 268,503 - -0.0 268,532 - -0.3 268,624 + -0.8 268,658 - +0.2 268,904 - DvMF_0238 0.75 -0.3 269,303 + -0.8 269,308 + -0.2 269,356 - -0.2 269,364 - -0.4 269,495 + DvMF_0239 0.11 -0.3 269,503 - DvMF_0239 0.12 -0.8 269,674 + DvMF_0239 0.18 -0.7 269,777 + DvMF_0239 0.22 -1.1 269,824 + DvMF_0239 0.23 -0.5 270,355 - DvMF_0239 0.43 -0.5 270,497 + DvMF_0239 0.48 -0.5 270,513 + DvMF_0239 0.49 -0.4 270,661 - DvMF_0239 0.54 -0.6 271,018 + DvMF_0239 0.68 -0.3 271,058 - DvMF_0239 0.69 -0.5 271,058 - DvMF_0239 0.69 -1.4 271,058 - DvMF_0239 0.69 +0.0 271,069 + DvMF_0239 0.70 -0.4 271,130 + DvMF_0239 0.72 -0.6 271,134 + DvMF_0239 0.72 -0.4 271,195 - DvMF_0239 0.74 -0.0 271,198 + DvMF_0239 0.74 -0.4 271,261 - DvMF_0239 0.77 -0.5 271,374 + DvMF_0239 0.81 -0.3 271,489 + DvMF_0239 0.85 -0.4 271,586 - DvMF_0239 0.89 -0.1 271,683 + -0.2 271,725 + -1.3 271,796 + -0.3 271,796 + -0.2 271,796 + -0.4 271,804 - -0.6 271,804 - -0.3 271,804 - -0.1 271,804 - -0.4 271,855 + -0.8 271,863 - -0.4 271,869 + -0.1 271,869 + -0.2 272,028 - -0.3 272,182 - DvMF_0240 0.14 -0.5 272,396 + DvMF_0240 0.72 +0.0 272,396 + DvMF_0240 0.72 -0.6 272,636 - -0.3 272,656 + -0.4 272,800 - DvMF_0241 0.17 -0.7
Or see this region's nucleotide sequence