Strain Fitness in Shewanella loihica PV-4 around Shew_2814

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2813 and deoA are separated by 11 nucleotidesdeoA and Shew_2815 are separated by 157 nucleotides Shew_2813: Shew_2813 - phosphopentomutase (RefSeq), at 3,333,109 to 3,334,326 _2813 Shew_2814: deoA - thymidine phosphorylase (RefSeq), at 3,334,338 to 3,335,669 deoA Shew_2815: Shew_2815 - deoxyribose-phosphate aldolase (RefSeq), at 3,335,827 to 3,336,600 _2815 Position (kb) 3334 3335 3336Strain fitness (log2 ratio) -3 -2 -1 0 1at 3334.148 kb on - strand, within Shew_2813at 3334.981 kb on + strand, within deoAat 3335.418 kb on - strand, within deoAat 3335.544 kb on - strandat 3335.843 kb on + strandat 3336.384 kb on - strand, within Shew_2815at 3336.496 kb on - strand, within Shew_2815at 3336.555 kb on - strandat 3336.569 kb on - strandat 3336.600 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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3,334,148 - Shew_2813 0.85 -3.7
3,334,981 + deoA Shew_2814 0.48 -1.7
3,335,418 - deoA Shew_2814 0.81 -1.0
3,335,544 - -1.6
3,335,843 + -1.8
3,336,384 - Shew_2815 0.72 -1.2
3,336,496 - Shew_2815 0.86 -1.9
3,336,555 - -0.8
3,336,569 - -0.6
3,336,600 + -1.3

Or see this region's nucleotide sequence