Strain Fitness in Shewanella loihica PV-4 around Shew_2386

Experiment: Chlorite 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2385 and Shew_2386 are separated by 72 nucleotidesShew_2386 and Shew_2387 are separated by 342 nucleotides Shew_2385: Shew_2385 - TonB-dependent receptor, plug (RefSeq), at 2,792,231 to 2,794,918 _2385 Shew_2386: Shew_2386 - hypothetical protein (RefSeq), at 2,794,991 to 2,796,520 _2386 Shew_2387: Shew_2387 - LysR family transcriptional regulator (RefSeq), at 2,796,863 to 2,797,777 _2387 Position (kb) 2794 2795 2796 2797Strain fitness (log2 ratio) -2 -1 0 1at 2794.055 kb on - strand, within Shew_2385at 2794.080 kb on - strand, within Shew_2385at 2794.097 kb on + strand, within Shew_2385at 2795.107 kb on - strandat 2795.810 kb on + strand, within Shew_2386at 2796.301 kb on + strand, within Shew_2386at 2797.157 kb on + strand, within Shew_2387at 2797.185 kb on - strand, within Shew_2387at 2797.258 kb on - strand, within Shew_2387at 2797.352 kb on - strand, within Shew_2387at 2797.384 kb on + strand, within Shew_2387

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 200 mM
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2,794,055 - Shew_2385 0.68 +0.2
2,794,080 - Shew_2385 0.69 +0.1
2,794,097 + Shew_2385 0.69 +0.5
2,795,107 - -0.0
2,795,810 + Shew_2386 0.54 -1.1
2,796,301 + Shew_2386 0.86 -0.4
2,797,157 + Shew_2387 0.32 +0.1
2,797,185 - Shew_2387 0.35 -1.4
2,797,258 - Shew_2387 0.43 -0.9
2,797,352 - Shew_2387 0.53 -0.1
2,797,384 + Shew_2387 0.57 -1.8

Or see this region's nucleotide sequence