Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0930 and Shew_0931 overlap by 23 nucleotides Shew_0931 and Shew_0932 are separated by 62 nucleotides Shew_0932 and Shew_0933 are separated by 39 nucleotides Shew_0933 and Shew_0934 are separated by 115 nucleotides
Shew_0930: Shew_0930 - AMMECR1 domain-containing protein (RefSeq), at 1,064,505 to 1,065,080
_0930
Shew_0931: Shew_0931 - hypothetical protein (RefSeq), at 1,065,058 to 1,065,858
_0931
Shew_0932: Shew_0932 - radical SAM domain-containing protein (RefSeq), at 1,065,921 to 1,067,009
_0932
Shew_0933: Shew_0933 - methyltransferase type 11 (RefSeq), at 1,067,049 to 1,067,720
_0933
Shew_0934: Shew_0934 - TPR repeat-containing protein (RefSeq), at 1,067,836 to 1,068,750
_0934
Position (kb)
1065
1066
1067
1068 Strain fitness (log2 ratio)
-1
0
1 at 1065.056 kb on + strand at 1065.056 kb on + strand at 1065.056 kb on + strand at 1065.064 kb on - strand at 1065.064 kb on - strand at 1065.066 kb on + strand at 1065.526 kb on - strand, within Shew_0931 at 1065.539 kb on - strand, within Shew_0931 at 1065.539 kb on - strand, within Shew_0931 at 1065.740 kb on - strand, within Shew_0931 at 1065.826 kb on - strand at 1065.979 kb on + strand at 1066.196 kb on - strand, within Shew_0932 at 1066.713 kb on - strand, within Shew_0932 at 1066.784 kb on + strand, within Shew_0932 at 1067.103 kb on + strand at 1067.349 kb on + strand, within Shew_0933 at 1067.349 kb on + strand, within Shew_0933 at 1067.887 kb on - strand at 1067.987 kb on - strand, within Shew_0934
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 1,065,056 + +0.4 1,065,056 + -0.0 1,065,056 + +1.2 1,065,064 - -0.5 1,065,064 - -0.2 1,065,066 + -0.7 1,065,526 - Shew_0931 0.58 +0.3 1,065,539 - Shew_0931 0.60 +1.6 1,065,539 - Shew_0931 0.60 +0.0 1,065,740 - Shew_0931 0.85 +0.1 1,065,826 - -0.3 1,065,979 + +0.5 1,066,196 - Shew_0932 0.25 -0.4 1,066,713 - Shew_0932 0.73 -1.4 1,066,784 + Shew_0932 0.79 -0.6 1,067,103 + +0.2 1,067,349 + Shew_0933 0.45 -0.0 1,067,349 + Shew_0933 0.45 +0.4 1,067,887 - +0.1 1,067,987 - Shew_0934 0.17 +0.4
Or see this region's nucleotide sequence