Experiment: Chlorite 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0303 and Shew_0304 are separated by 222 nucleotides Shew_0304 and Shew_0305 are separated by 240 nucleotides Shew_0305 and Shew_0306 are separated by 29 nucleotides
Shew_0303: Shew_0303 - hypothetical protein (RefSeq), at 324,998 to 326,350
_0303
Shew_0304: Shew_0304 - hypothetical protein (RefSeq), at 326,573 to 326,833
_0304
Shew_0305: Shew_0305 - ATP-dependent DNA helicase Rep (RefSeq), at 327,074 to 329,086
_0305
Shew_0306: Shew_0306 - diguanylate cyclase/phosphodiesterase with GAF sensor (RefSeq), at 329,116 to 331,764
_0306
Position (kb) 327
328
329
330 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 326.104 kb on - strand, within Shew_0303 at 326.128 kb on - strand, within Shew_0303 at 326.128 kb on - strand, within Shew_0303 at 326.184 kb on + strand, within Shew_0303 at 326.265 kb on - strand at 326.403 kb on - strand at 326.518 kb on - strand at 326.649 kb on + strand, within Shew_0304 at 326.764 kb on + strand, within Shew_0304 at 326.772 kb on - strand, within Shew_0304 at 326.934 kb on - strand at 329.254 kb on - strand at 329.395 kb on + strand, within Shew_0306 at 329.395 kb on + strand, within Shew_0306 at 329.395 kb on + strand, within Shew_0306 at 329.395 kb on + strand, within Shew_0306 at 329.395 kb on + strand, within Shew_0306 at 329.403 kb on - strand, within Shew_0306 at 329.430 kb on + strand, within Shew_0306 at 329.430 kb on + strand, within Shew_0306 at 329.438 kb on - strand, within Shew_0306 at 329.438 kb on - strand, within Shew_0306 at 329.438 kb on - strand, within Shew_0306 at 329.438 kb on - strand, within Shew_0306 at 329.548 kb on - strand, within Shew_0306 at 329.625 kb on + strand, within Shew_0306 at 329.674 kb on - strand, within Shew_0306 at 329.674 kb on - strand, within Shew_0306 at 329.948 kb on + strand, within Shew_0306
Per-strain Table
Position Strand Gene LocusTag Fraction Chlorite 200 mM remove 326,104 - Shew_0303 0.82 -0.6 326,128 - Shew_0303 0.84 -1.1 326,128 - Shew_0303 0.84 -0.4 326,184 + Shew_0303 0.88 +0.1 326,265 - -0.0 326,403 - -0.9 326,518 - -0.1 326,649 + Shew_0304 0.29 -2.5 326,764 + Shew_0304 0.73 -4.7 326,772 - Shew_0304 0.76 -5.2 326,934 - -0.0 329,254 - +0.3 329,395 + Shew_0306 0.11 +0.1 329,395 + Shew_0306 0.11 +0.0 329,395 + Shew_0306 0.11 -0.3 329,395 + Shew_0306 0.11 +1.4 329,395 + Shew_0306 0.11 -0.2 329,403 - Shew_0306 0.11 -0.5 329,430 + Shew_0306 0.12 +0.3 329,430 + Shew_0306 0.12 +0.1 329,438 - Shew_0306 0.12 +0.3 329,438 - Shew_0306 0.12 +0.1 329,438 - Shew_0306 0.12 -0.4 329,438 - Shew_0306 0.12 -1.5 329,548 - Shew_0306 0.16 -0.0 329,625 + Shew_0306 0.19 -0.1 329,674 - Shew_0306 0.21 +0.2 329,674 - Shew_0306 0.21 +0.1 329,948 + Shew_0306 0.31 -0.1
Or see this region's nucleotide sequence