Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03998

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03998 and CCNA_00464 are separated by 713 nucleotides CCNA_03998: CCNA_03998 - GT1/WbuB-like N-acetyl-L-fucosamine transferase, at 475,532 to 476,800 _03998 CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678 _00464 Position (kb) 475 476 477Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 474.545 kb on + strandat 474.545 kb on + strandat 474.545 kb on + strandat 474.545 kb on + strandat 474.545 kb on + strandat 474.553 kb on + strandat 474.553 kb on - strandat 474.553 kb on - strandat 474.553 kb on - strandat 474.582 kb on - strandat 474.592 kb on + strandat 474.592 kb on + strandat 474.600 kb on - strandat 474.621 kb on + strandat 474.623 kb on + strandat 474.629 kb on - strandat 474.631 kb on - strandat 474.636 kb on + strandat 474.644 kb on - strandat 474.695 kb on + strandat 474.695 kb on + strandat 474.800 kb on - strandat 474.820 kb on + strandat 474.824 kb on + strandat 474.828 kb on - strandat 474.859 kb on + strandat 474.869 kb on + strandat 474.877 kb on - strandat 474.877 kb on - strandat 474.894 kb on - strandat 474.989 kb on - strandat 474.989 kb on - strandat 474.995 kb on + strandat 475.008 kb on - strandat 475.010 kb on + strandat 475.015 kb on + strandat 475.020 kb on + strandat 475.028 kb on - strandat 475.040 kb on + strandat 475.047 kb on + strandat 475.048 kb on - strandat 475.048 kb on - strandat 475.048 kb on - strandat 475.053 kb on - strandat 475.053 kb on - strandat 475.055 kb on - strandat 475.055 kb on - strandat 475.055 kb on - strandat 475.067 kb on + strandat 475.067 kb on + strandat 475.067 kb on + strandat 475.067 kb on + strandat 475.067 kb on + strandat 475.069 kb on - strandat 475.075 kb on - strandat 475.075 kb on - strandat 475.075 kb on - strandat 475.075 kb on - strandat 475.075 kb on - strandat 475.078 kb on + strandat 475.086 kb on - strandat 475.135 kb on + strandat 475.143 kb on - strandat 475.190 kb on - strandat 475.233 kb on - strandat 475.233 kb on - strandat 475.259 kb on + strandat 475.259 kb on + strandat 475.260 kb on + strandat 475.260 kb on + strandat 475.260 kb on - strandat 475.268 kb on - strandat 475.268 kb on - strandat 475.268 kb on - strandat 475.268 kb on - strandat 475.268 kb on - strandat 475.282 kb on + strandat 475.330 kb on + strandat 475.368 kb on + strandat 475.378 kb on + strandat 475.386 kb on - strandat 475.396 kb on - strandat 475.402 kb on + strandat 475.410 kb on - strandat 475.417 kb on + strandat 475.417 kb on + strandat 475.425 kb on - strandat 475.444 kb on + strandat 475.447 kb on + strandat 475.447 kb on + strandat 475.455 kb on - strandat 475.455 kb on - strandat 475.455 kb on - strandat 475.462 kb on + strandat 475.464 kb on + strandat 475.466 kb on + strandat 475.472 kb on - strandat 475.496 kb on - strandat 475.506 kb on + strandat 475.512 kb on + strandat 475.526 kb on + strandat 475.529 kb on - strandat 475.553 kb on + strandat 475.554 kb on + strandat 475.554 kb on + strandat 475.555 kb on + strandat 475.571 kb on + strandat 475.572 kb on + strandat 475.602 kb on - strandat 475.610 kb on + strandat 475.630 kb on + strandat 475.650 kb on - strandat 475.660 kb on - strand, within CCNA_03998at 475.660 kb on - strand, within CCNA_03998at 475.668 kb on + strand, within CCNA_03998at 475.676 kb on - strand, within CCNA_03998at 475.683 kb on - strand, within CCNA_03998at 475.697 kb on + strand, within CCNA_03998at 475.704 kb on - strand, within CCNA_03998at 475.704 kb on - strand, within CCNA_03998at 475.718 kb on - strand, within CCNA_03998at 475.756 kb on + strand, within CCNA_03998at 475.786 kb on + strand, within CCNA_03998at 475.793 kb on - strand, within CCNA_03998at 475.868 kb on + strand, within CCNA_03998at 475.870 kb on + strand, within CCNA_03998at 475.877 kb on + strand, within CCNA_03998at 475.877 kb on + strand, within CCNA_03998at 475.877 kb on + strand, within CCNA_03998at 475.879 kb on - strand, within CCNA_03998at 475.914 kb on - strand, within CCNA_03998at 475.919 kb on + strand, within CCNA_03998at 475.919 kb on + strand, within CCNA_03998at 475.926 kb on + strand, within CCNA_03998at 475.926 kb on + strand, within CCNA_03998at 475.934 kb on - strand, within CCNA_03998at 475.965 kb on - strand, within CCNA_03998at 475.965 kb on - strand, within CCNA_03998at 475.993 kb on + strand, within CCNA_03998at 476.034 kb on - strand, within CCNA_03998at 476.060 kb on - strand, within CCNA_03998at 476.060 kb on - strand, within CCNA_03998at 476.078 kb on + strand, within CCNA_03998at 476.086 kb on - strand, within CCNA_03998at 476.117 kb on - strand, within CCNA_03998at 476.121 kb on + strand, within CCNA_03998at 476.150 kb on - strand, within CCNA_03998at 476.191 kb on - strand, within CCNA_03998at 476.203 kb on - strand, within CCNA_03998at 476.219 kb on + strand, within CCNA_03998at 476.234 kb on + strand, within CCNA_03998at 476.242 kb on + strand, within CCNA_03998at 476.242 kb on - strand, within CCNA_03998at 476.277 kb on - strand, within CCNA_03998at 476.281 kb on + strand, within CCNA_03998at 476.283 kb on - strand, within CCNA_03998at 476.306 kb on - strand, within CCNA_03998at 476.306 kb on - strand, within CCNA_03998at 476.324 kb on + strand, within CCNA_03998at 476.330 kb on + strand, within CCNA_03998at 476.344 kb on + strand, within CCNA_03998at 476.352 kb on - strand, within CCNA_03998at 476.357 kb on + strand, within CCNA_03998at 476.359 kb on + strand, within CCNA_03998at 476.414 kb on - strand, within CCNA_03998at 476.420 kb on + strand, within CCNA_03998at 476.423 kb on - strand, within CCNA_03998at 476.436 kb on - strand, within CCNA_03998at 476.470 kb on + strand, within CCNA_03998at 476.516 kb on + strand, within CCNA_03998at 476.544 kb on - strand, within CCNA_03998at 476.544 kb on - strand, within CCNA_03998at 476.552 kb on + strand, within CCNA_03998at 476.572 kb on + strand, within CCNA_03998at 476.580 kb on - strand, within CCNA_03998at 476.594 kb on + strand, within CCNA_03998at 476.609 kb on + strand, within CCNA_03998at 476.609 kb on + strand, within CCNA_03998at 476.616 kb on + strand, within CCNA_03998at 476.651 kb on + strand, within CCNA_03998at 476.659 kb on - strand, within CCNA_03998at 476.659 kb on - strand, within CCNA_03998at 476.674 kb on - strandat 476.748 kb on + strandat 476.748 kb on + strandat 476.765 kb on + strandat 476.779 kb on + strandat 476.779 kb on + strandat 476.799 kb on + strandat 476.808 kb on + strandat 476.808 kb on + strandat 476.808 kb on + strandat 476.808 kb on + strandat 476.834 kb on - strandat 476.872 kb on + strandat 476.872 kb on + strandat 476.872 kb on + strandat 476.872 kb on + strandat 476.880 kb on - strandat 476.880 kb on - strandat 476.880 kb on - strandat 476.880 kb on - strandat 476.910 kb on + strandat 476.910 kb on + strandat 476.910 kb on + strandat 476.914 kb on - strandat 476.918 kb on - strandat 477.017 kb on + strandat 477.212 kb on + strandat 477.212 kb on + strandat 477.246 kb on + strandat 477.246 kb on + strandat 477.246 kb on + strandat 477.254 kb on - strandat 477.280 kb on + strandat 477.280 kb on + strandat 477.297 kb on - strandat 477.304 kb on + strandat 477.304 kb on + strandat 477.304 kb on + strandat 477.304 kb on + strandat 477.304 kb on + strandat 477.304 kb on + strandat 477.306 kb on + strandat 477.312 kb on - strandat 477.312 kb on - strandat 477.312 kb on - strandat 477.312 kb on - strandat 477.324 kb on - strandat 477.332 kb on + strandat 477.348 kb on + strandat 477.370 kb on - strandat 477.390 kb on - strandat 477.390 kb on - strandat 477.474 kb on + strandat 477.474 kb on + strandat 477.474 kb on + strandat 477.482 kb on - strandat 477.492 kb on + strandat 477.493 kb on - strandat 477.495 kb on + strandat 477.495 kb on + strandat 477.495 kb on + strandat 477.495 kb on + strandat 477.495 kb on + strandat 477.503 kb on + strandat 477.503 kb on - strandat 477.503 kb on - strandat 477.503 kb on - strandat 477.506 kb on + strandat 477.506 kb on + strandat 477.517 kb on - strandat 477.551 kb on + strand, within CCNA_00464at 477.556 kb on + strand, within CCNA_00464at 477.558 kb on - strand, within CCNA_00464at 477.559 kb on - strand, within CCNA_00464at 477.565 kb on + strand, within CCNA_00464at 477.574 kb on - strand, within CCNA_00464at 477.576 kb on + strand, within CCNA_00464at 477.576 kb on + strand, within CCNA_00464at 477.576 kb on + strand, within CCNA_00464at 477.579 kb on - strand, within CCNA_00464at 477.583 kb on + strand, within CCNA_00464at 477.584 kb on + strand, within CCNA_00464at 477.584 kb on - strand, within CCNA_00464at 477.584 kb on - strand, within CCNA_00464at 477.584 kb on - strand, within CCNA_00464at 477.584 kb on - strand, within CCNA_00464at 477.604 kb on - strand, within CCNA_00464at 477.624 kb on + strand, within CCNA_00464at 477.659 kb on - strand, within CCNA_00464at 477.665 kb on + strandat 477.682 kb on + strandat 477.692 kb on - strandat 477.794 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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474,545 + +1.9
474,545 + -1.9
474,545 + -1.0
474,545 + +0.7
474,545 + +0.5
474,553 + -0.6
474,553 - -0.3
474,553 - -1.1
474,553 - -1.1
474,582 - +3.5
474,592 + -2.3
474,592 + -0.5
474,600 - +0.3
474,621 + +1.2
474,623 + +0.4
474,629 - +1.7
474,631 - -0.9
474,636 + -1.8
474,644 - -0.1
474,695 + -0.1
474,695 + -0.9
474,800 - +1.7
474,820 + -1.1
474,824 + -0.7
474,828 - +0.6
474,859 + -0.9
474,869 + -1.8
474,877 - +0.9
474,877 - +0.5
474,894 - +1.0
474,989 - -0.1
474,989 - +0.5
474,995 + -0.2
475,008 - +0.5
475,010 + +0.3
475,015 + +0.3
475,020 + +0.0
475,028 - -0.4
475,040 + -1.3
475,047 + +2.0
475,048 - +0.6
475,048 - +0.2
475,048 - +0.3
475,053 - -0.3
475,053 - -0.2
475,055 - +1.0
475,055 - -0.5
475,055 - -0.5
475,067 + +0.9
475,067 + -0.9
475,067 + -0.7
475,067 + +0.0
475,067 + -1.8
475,069 - +1.8
475,075 - +0.4
475,075 - +0.3
475,075 - +0.0
475,075 - +0.5
475,075 - -1.5
475,078 + +0.3
475,086 - -1.1
475,135 + -0.5
475,143 - -0.8
475,190 - +0.7
475,233 - -1.4
475,233 - -0.8
475,259 + -1.5
475,259 + +0.5
475,260 + -1.1
475,260 + -0.6
475,260 - +1.0
475,268 - -0.5
475,268 - -0.5
475,268 - -1.4
475,268 - -0.2
475,268 - -0.1
475,282 + -0.6
475,330 + +0.6
475,368 + -0.4
475,378 + +0.1
475,386 - +0.0
475,396 - +1.5
475,402 + -2.7
475,410 - +0.9
475,417 + +0.6
475,417 + -1.9
475,425 - -1.0
475,444 + -0.9
475,447 + +1.9
475,447 + +0.6
475,455 - -0.1
475,455 - +1.5
475,455 - +2.3
475,462 + -0.5
475,464 + -0.9
475,466 + +0.2
475,472 - -1.6
475,496 - -0.4
475,506 + +1.2
475,512 + -0.5
475,526 + -1.4
475,529 - -0.9
475,553 + -0.1
475,554 + -0.4
475,554 + +0.6
475,555 + -0.3
475,571 + -2.1
475,572 + +1.9
475,602 - +0.2
475,610 + -1.5
475,630 + -1.3
475,650 - -0.7
475,660 - CCNA_03998 0.10 +0.4
475,660 - CCNA_03998 0.10 -0.1
475,668 + CCNA_03998 0.11 -1.5
475,676 - CCNA_03998 0.11 -0.4
475,683 - CCNA_03998 0.12 +0.3
475,697 + CCNA_03998 0.13 -1.4
475,704 - CCNA_03998 0.14 -0.2
475,704 - CCNA_03998 0.14 -2.1
475,718 - CCNA_03998 0.15 -1.1
475,756 + CCNA_03998 0.18 -1.4
475,786 + CCNA_03998 0.20 +2.0
475,793 - CCNA_03998 0.21 -1.0
475,868 + CCNA_03998 0.26 -0.9
475,870 + CCNA_03998 0.27 -2.3
475,877 + CCNA_03998 0.27 -0.7
475,877 + CCNA_03998 0.27 -0.4
475,877 + CCNA_03998 0.27 -0.6
475,879 - CCNA_03998 0.27 +0.8
475,914 - CCNA_03998 0.30 -0.4
475,919 + CCNA_03998 0.30 -2.5
475,919 + CCNA_03998 0.30 -1.9
475,926 + CCNA_03998 0.31 -1.0
475,926 + CCNA_03998 0.31 -0.1
475,934 - CCNA_03998 0.32 -1.3
475,965 - CCNA_03998 0.34 -1.3
475,965 - CCNA_03998 0.34 -1.6
475,993 + CCNA_03998 0.36 +0.7
476,034 - CCNA_03998 0.40 -1.5
476,060 - CCNA_03998 0.42 +1.9
476,060 - CCNA_03998 0.42 -0.3
476,078 + CCNA_03998 0.43 -1.6
476,086 - CCNA_03998 0.44 -1.1
476,117 - CCNA_03998 0.46 -0.6
476,121 + CCNA_03998 0.46 -0.6
476,150 - CCNA_03998 0.49 -2.1
476,191 - CCNA_03998 0.52 -1.7
476,203 - CCNA_03998 0.53 -2.8
476,219 + CCNA_03998 0.54 -0.1
476,234 + CCNA_03998 0.55 -1.7
476,242 + CCNA_03998 0.56 -0.9
476,242 - CCNA_03998 0.56 -0.5
476,277 - CCNA_03998 0.59 -1.3
476,281 + CCNA_03998 0.59 -0.4
476,283 - CCNA_03998 0.59 -2.6
476,306 - CCNA_03998 0.61 -1.6
476,306 - CCNA_03998 0.61 -1.9
476,324 + CCNA_03998 0.62 -1.3
476,330 + CCNA_03998 0.63 +0.2
476,344 + CCNA_03998 0.64 +0.2
476,352 - CCNA_03998 0.65 -0.7
476,357 + CCNA_03998 0.65 -1.1
476,359 + CCNA_03998 0.65 -1.2
476,414 - CCNA_03998 0.70 -1.6
476,420 + CCNA_03998 0.70 +0.0
476,423 - CCNA_03998 0.70 +0.4
476,436 - CCNA_03998 0.71 -0.8
476,470 + CCNA_03998 0.74 -0.3
476,516 + CCNA_03998 0.78 -0.3
476,544 - CCNA_03998 0.80 -1.1
476,544 - CCNA_03998 0.80 +0.2
476,552 + CCNA_03998 0.80 -1.4
476,572 + CCNA_03998 0.82 -1.6
476,580 - CCNA_03998 0.83 +1.3
476,594 + CCNA_03998 0.84 -0.9
476,609 + CCNA_03998 0.85 -2.2
476,609 + CCNA_03998 0.85 -1.2
476,616 + CCNA_03998 0.85 -4.0
476,651 + CCNA_03998 0.88 -1.3
476,659 - CCNA_03998 0.89 +0.3
476,659 - CCNA_03998 0.89 -1.6
476,674 - +0.2
476,748 + +0.4
476,748 + +0.2
476,765 + +0.3
476,779 + -0.9
476,779 + -0.1
476,799 + +1.9
476,808 + +0.1
476,808 + +0.9
476,808 + +2.0
476,808 + -2.1
476,834 - +0.4
476,872 + +0.9
476,872 + -0.5
476,872 + -0.2
476,872 + -0.8
476,880 - -0.5
476,880 - +1.0
476,880 - -0.9
476,880 - -0.7
476,910 + +1.7
476,910 + -1.4
476,910 + -1.7
476,914 - -0.5
476,918 - +0.6
477,017 + -0.4
477,212 + +1.3
477,212 + -0.7
477,246 + +1.4
477,246 + -0.8
477,246 + -0.2
477,254 - -0.1
477,280 + -0.8
477,280 + +0.4
477,297 - -1.7
477,304 + -2.3
477,304 + -1.0
477,304 + -1.0
477,304 + -1.7
477,304 + +1.5
477,304 + -0.3
477,306 + +0.1
477,312 - +2.3
477,312 - +1.5
477,312 - -0.7
477,312 - +0.4
477,324 - -0.0
477,332 + -0.0
477,348 + -0.0
477,370 - -1.0
477,390 - +0.5
477,390 - +1.3
477,474 + +0.7
477,474 + +2.0
477,474 + +3.0
477,482 - +0.2
477,492 + +0.2
477,493 - -1.7
477,495 + -0.4
477,495 + +0.9
477,495 + -0.1
477,495 + +0.9
477,495 + -0.4
477,503 + +0.7
477,503 - -0.6
477,503 - -0.3
477,503 - -1.1
477,506 + -0.6
477,506 + +0.0
477,517 - -0.7
477,551 + CCNA_00464 0.22 -0.2
477,556 + CCNA_00464 0.25 -1.8
477,558 - CCNA_00464 0.27 -0.5
477,559 - CCNA_00464 0.27 -1.1
477,565 + CCNA_00464 0.31 -1.9
477,574 - CCNA_00464 0.36 -0.5
477,576 + CCNA_00464 0.38 +0.2
477,576 + CCNA_00464 0.38 +0.3
477,576 + CCNA_00464 0.38 -0.5
477,579 - CCNA_00464 0.39 +1.6
477,583 + CCNA_00464 0.42 +3.2
477,584 + CCNA_00464 0.42 -0.5
477,584 - CCNA_00464 0.42 +0.3
477,584 - CCNA_00464 0.42 -0.7
477,584 - CCNA_00464 0.42 +0.7
477,584 - CCNA_00464 0.42 -1.8
477,604 - CCNA_00464 0.55 +0.2
477,624 + CCNA_00464 0.67 +0.4
477,659 - CCNA_00464 0.88 -0.8
477,665 + -0.3
477,682 + +0.1
477,692 - -1.2
477,794 + +1.8

Or see this region's nucleotide sequence