Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03581 and CCNA_03582 are separated by 3 nucleotides CCNA_03582 and CCNA_03583 overlap by 4 nucleotides CCNA_03583 and CCNA_03584 are separated by 139 nucleotides CCNA_03584 and CCNA_03585 are separated by 79 nucleotides
CCNA_03581: CCNA_03581 - transporter, drug/metabolite exporter family, at 3,737,998 to 3,738,870
_03581
CCNA_03582: CCNA_03582 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 3,738,874 to 3,739,671
_03582
CCNA_03583: CCNA_03583 - hypothetical protein, at 3,739,668 to 3,739,859
_03583
CCNA_03584: CCNA_03584 - histidine phosphotransferase ChpT, at 3,739,999 to 3,740,676
_03584
CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133
_03585
Position (kb)
3739
3740 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3738.671 kb on - strand, within CCNA_03581 at 3738.674 kb on - strand, within CCNA_03581 at 3738.686 kb on + strand, within CCNA_03581 at 3738.714 kb on - strand, within CCNA_03581 at 3738.716 kb on + strand at 3738.716 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.716 kb on + strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.724 kb on - strand, within CCNA_03581 at 3738.819 kb on - strand at 3738.834 kb on - strand at 3738.854 kb on + strand at 3738.869 kb on + strand at 3738.869 kb on + strand at 3738.870 kb on - strand at 3738.872 kb on + strand at 3738.880 kb on - strand at 3739.630 kb on - strand at 3739.630 kb on - strand at 3739.642 kb on + strand at 3739.666 kb on + strand at 3739.674 kb on - strand at 3739.674 kb on - strand at 3739.753 kb on - strand, within CCNA_03583 at 3739.791 kb on + strand, within CCNA_03583 at 3739.798 kb on - strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.811 kb on + strand, within CCNA_03583 at 3739.819 kb on - strand, within CCNA_03583 at 3739.824 kb on - strand, within CCNA_03583 at 3739.869 kb on + strand at 3739.950 kb on + strand at 3739.950 kb on + strand at 3739.953 kb on - strand at 3739.958 kb on - strand at 3739.963 kb on - strand at 3739.980 kb on - strand at 3740.699 kb on + strand at 3740.704 kb on + strand at 3740.707 kb on - strand at 3740.753 kb on + strand at 3740.761 kb on - strand at 3740.768 kb on + strand at 3740.768 kb on + strand at 3740.776 kb on - strand at 3740.783 kb on - strand at 3740.836 kb on + strand, within CCNA_03585
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 3,738,671 - CCNA_03581 0.77 -1.1 3,738,674 - CCNA_03581 0.77 -0.6 3,738,686 + CCNA_03581 0.79 -2.4 3,738,714 - CCNA_03581 0.82 -0.0 3,738,716 + +1.4 3,738,716 + CCNA_03581 0.82 -1.4 3,738,716 + CCNA_03581 0.82 -0.4 3,738,716 + CCNA_03581 0.82 +0.0 3,738,724 - CCNA_03581 0.83 -0.6 3,738,724 - CCNA_03581 0.83 -2.1 3,738,724 - CCNA_03581 0.83 +0.4 3,738,724 - CCNA_03581 0.83 +0.3 3,738,819 - -0.3 3,738,834 - -1.1 3,738,854 + +2.5 3,738,869 + +1.5 3,738,869 + -0.8 3,738,870 - +0.8 3,738,872 + +2.1 3,738,880 - -0.3 3,739,630 - +0.0 3,739,630 - +0.3 3,739,642 + +1.1 3,739,666 + +2.1 3,739,674 - -1.8 3,739,674 - +2.7 3,739,753 - CCNA_03583 0.44 -1.0 3,739,791 + CCNA_03583 0.64 +2.7 3,739,798 - CCNA_03583 0.68 -1.4 3,739,811 + CCNA_03583 0.74 -0.6 3,739,811 + CCNA_03583 0.74 -1.2 3,739,811 + CCNA_03583 0.74 +1.4 3,739,811 + CCNA_03583 0.74 -0.5 3,739,819 - CCNA_03583 0.79 -0.5 3,739,824 - CCNA_03583 0.81 -2.4 3,739,869 + -0.3 3,739,950 + -0.3 3,739,950 + -0.9 3,739,953 - +0.1 3,739,958 - +1.4 3,739,963 - +0.7 3,739,980 - -0.1 3,740,699 + +1.1 3,740,704 + -0.1 3,740,707 - -1.7 3,740,753 + +0.6 3,740,761 - -0.9 3,740,768 + -1.0 3,740,768 + +0.1 3,740,776 - +0.5 3,740,783 - +1.8 3,740,836 + CCNA_03585 0.21 +0.7
Or see this region's nucleotide sequence