Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03524 and CCNA_03525 are separated by 9 nucleotides CCNA_03525 and CCNA_03526 overlap by 54 nucleotides CCNA_03526 and CCNA_03527 are separated by 18 nucleotides CCNA_03527 and CCNA_03528 are separated by 142 nucleotides CCNA_03528 and CCNA_03529 are separated by 46 nucleotides
CCNA_03524: CCNA_03524 - di-/tripeptide transporter, at 3,681,121 to 3,683,001
_03524
CCNA_03525: CCNA_03525 - hypothetical protein, at 3,683,011 to 3,683,352
_03525
CCNA_03526: CCNA_03526 - hypothetical protein, at 3,683,299 to 3,683,442
_03526
CCNA_03527: CCNA_03527 - glutamate-cysteine ligase family 2, at 3,683,461 to 3,684,822
_03527
CCNA_03528: CCNA_03528 - RNA methyltransferase, at 3,684,965 to 3,685,681
_03528
CCNA_03529: CCNA_03529 - polyphosphate kinase 2, at 3,685,728 to 3,686,489
_03529
Position (kb)
3683
3684
3685 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3682.465 kb on + strand, within CCNA_03524 at 3682.465 kb on + strand, within CCNA_03524 at 3682.468 kb on - strand, within CCNA_03524 at 3682.547 kb on - strand, within CCNA_03524 at 3682.548 kb on - strand, within CCNA_03524 at 3682.579 kb on + strand, within CCNA_03524 at 3682.579 kb on + strand, within CCNA_03524 at 3682.627 kb on + strand, within CCNA_03524 at 3682.636 kb on - strand, within CCNA_03524 at 3682.733 kb on - strand, within CCNA_03524 at 3682.771 kb on - strand, within CCNA_03524 at 3682.794 kb on + strand, within CCNA_03524 at 3682.851 kb on - strand at 3682.915 kb on + strand at 3682.969 kb on + strand at 3683.098 kb on + strand, within CCNA_03525 at 3683.106 kb on - strand, within CCNA_03525 at 3683.166 kb on - strand, within CCNA_03525 at 3683.194 kb on - strand, within CCNA_03525 at 3683.209 kb on + strand, within CCNA_03525 at 3683.214 kb on + strand, within CCNA_03525 at 3683.214 kb on + strand, within CCNA_03525 at 3683.222 kb on - strand, within CCNA_03525 at 3683.237 kb on + strand, within CCNA_03525 at 3683.245 kb on - strand, within CCNA_03525 at 3683.245 kb on - strand, within CCNA_03525 at 3683.258 kb on + strand, within CCNA_03525 at 3683.302 kb on + strand at 3683.405 kb on + strand, within CCNA_03526 at 3683.410 kb on + strand, within CCNA_03526 at 3683.413 kb on - strand, within CCNA_03526 at 3683.413 kb on - strand, within CCNA_03526 at 3683.415 kb on + strand, within CCNA_03526 at 3683.458 kb on + strand at 3683.477 kb on + strand at 3683.477 kb on + strand at 3684.831 kb on + strand at 3684.836 kb on + strand at 3684.843 kb on - strand at 3684.851 kb on - strand at 3684.851 kb on - strand at 3684.870 kb on + strand at 3684.870 kb on + strand at 3684.871 kb on - strand at 3684.876 kb on - strand at 3684.910 kb on - strand at 3684.933 kb on + strand at 3684.933 kb on + strand at 3684.933 kb on + strand at 3684.941 kb on - strand at 3684.945 kb on + strand at 3684.945 kb on + strand at 3684.945 kb on + strand at 3684.945 kb on + strand at 3684.946 kb on + strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.953 kb on - strand at 3684.968 kb on + strand at 3684.985 kb on - strand at 3685.033 kb on + strand at 3685.037 kb on - strand, within CCNA_03528 at 3685.059 kb on - strand, within CCNA_03528 at 3685.066 kb on + strand, within CCNA_03528 at 3685.074 kb on - strand, within CCNA_03528 at 3685.121 kb on + strand, within CCNA_03528 at 3685.134 kb on - strand, within CCNA_03528 at 3685.144 kb on - strand, within CCNA_03528 at 3685.154 kb on - strand, within CCNA_03528 at 3685.216 kb on + strand, within CCNA_03528 at 3685.224 kb on - strand, within CCNA_03528 at 3685.296 kb on - strand, within CCNA_03528 at 3685.296 kb on - strand, within CCNA_03528 at 3685.350 kb on - strand, within CCNA_03528 at 3685.361 kb on + strand, within CCNA_03528 at 3685.370 kb on - strand, within CCNA_03528 at 3685.374 kb on - strand, within CCNA_03528 at 3685.410 kb on + strand, within CCNA_03528 at 3685.417 kb on - strand at 3685.425 kb on + strand, within CCNA_03528 at 3685.433 kb on - strand, within CCNA_03528 at 3685.433 kb on - strand, within CCNA_03528 at 3685.433 kb on - strand, within CCNA_03528 at 3685.437 kb on + strand, within CCNA_03528 at 3685.455 kb on - strand, within CCNA_03528 at 3685.467 kb on + strand, within CCNA_03528 at 3685.485 kb on + strand, within CCNA_03528 at 3685.486 kb on - strand, within CCNA_03528 at 3685.600 kb on + strand, within CCNA_03528 at 3685.604 kb on - strand, within CCNA_03528 at 3685.608 kb on - strand, within CCNA_03528 at 3685.662 kb on - strand at 3685.688 kb on + strand at 3685.696 kb on - strand at 3685.701 kb on - strand at 3685.712 kb on + strand at 3685.721 kb on - strand at 3685.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 3,682,465 + CCNA_03524 0.71 +0.9 3,682,465 + CCNA_03524 0.71 +1.1 3,682,468 - CCNA_03524 0.72 -2.3 3,682,547 - CCNA_03524 0.76 +1.3 3,682,548 - CCNA_03524 0.76 -1.9 3,682,579 + CCNA_03524 0.78 +0.5 3,682,579 + CCNA_03524 0.78 +1.0 3,682,627 + CCNA_03524 0.80 +0.3 3,682,636 - CCNA_03524 0.81 -2.1 3,682,733 - CCNA_03524 0.86 -2.4 3,682,771 - CCNA_03524 0.88 +1.7 3,682,794 + CCNA_03524 0.89 -0.4 3,682,851 - +2.1 3,682,915 + -1.1 3,682,969 + +2.0 3,683,098 + CCNA_03525 0.25 -0.1 3,683,106 - CCNA_03525 0.28 +3.1 3,683,166 - CCNA_03525 0.45 -0.1 3,683,194 - CCNA_03525 0.54 -0.4 3,683,209 + CCNA_03525 0.58 -1.4 3,683,214 + CCNA_03525 0.59 +0.4 3,683,214 + CCNA_03525 0.59 -2.2 3,683,222 - CCNA_03525 0.62 +0.4 3,683,237 + CCNA_03525 0.66 +0.4 3,683,245 - CCNA_03525 0.68 -1.3 3,683,245 - CCNA_03525 0.68 +0.1 3,683,258 + CCNA_03525 0.72 -0.8 3,683,302 + -1.0 3,683,405 + CCNA_03526 0.74 -1.1 3,683,410 + CCNA_03526 0.77 -1.3 3,683,413 - CCNA_03526 0.79 -1.6 3,683,413 - CCNA_03526 0.79 +0.5 3,683,415 + CCNA_03526 0.81 -2.0 3,683,458 + +0.0 3,683,477 + -1.7 3,683,477 + -0.8 3,684,831 + +0.7 3,684,836 + -1.3 3,684,843 - -0.7 3,684,851 - -1.8 3,684,851 - +0.7 3,684,870 + -1.8 3,684,870 + -1.1 3,684,871 - -2.4 3,684,876 - -2.5 3,684,910 - -1.1 3,684,933 + -0.3 3,684,933 + -0.5 3,684,933 + -0.6 3,684,941 - -0.4 3,684,945 + -1.2 3,684,945 + -2.0 3,684,945 + +0.1 3,684,945 + +0.6 3,684,946 + -0.4 3,684,953 - -0.3 3,684,953 - +0.7 3,684,953 - +0.1 3,684,953 - -0.3 3,684,953 - -1.5 3,684,968 + -1.3 3,684,985 - +1.1 3,685,033 + -1.4 3,685,037 - CCNA_03528 0.10 +1.4 3,685,059 - CCNA_03528 0.13 +1.4 3,685,066 + CCNA_03528 0.14 -1.6 3,685,074 - CCNA_03528 0.15 -0.2 3,685,121 + CCNA_03528 0.22 -0.9 3,685,134 - CCNA_03528 0.24 -0.1 3,685,144 - CCNA_03528 0.25 +1.6 3,685,154 - CCNA_03528 0.26 +1.6 3,685,216 + CCNA_03528 0.35 -0.6 3,685,224 - CCNA_03528 0.36 +1.7 3,685,296 - CCNA_03528 0.46 +1.6 3,685,296 - CCNA_03528 0.46 +1.1 3,685,350 - CCNA_03528 0.54 +2.5 3,685,361 + CCNA_03528 0.55 -0.9 3,685,370 - CCNA_03528 0.56 +1.8 3,685,374 - CCNA_03528 0.57 -0.4 3,685,410 + CCNA_03528 0.62 +0.9 3,685,417 - +4.2 3,685,425 + CCNA_03528 0.64 -0.1 3,685,433 - CCNA_03528 0.65 -0.8 3,685,433 - CCNA_03528 0.65 -0.7 3,685,433 - CCNA_03528 0.65 +2.1 3,685,437 + CCNA_03528 0.66 +1.8 3,685,455 - CCNA_03528 0.68 +2.5 3,685,467 + CCNA_03528 0.70 +0.7 3,685,485 + CCNA_03528 0.73 +0.6 3,685,486 - CCNA_03528 0.73 -2.0 3,685,600 + CCNA_03528 0.89 +0.9 3,685,604 - CCNA_03528 0.89 +1.3 3,685,608 - CCNA_03528 0.90 +2.0 3,685,662 - +1.1 3,685,688 + -0.1 3,685,696 - -1.8 3,685,701 - +0.1 3,685,712 + -1.7 3,685,721 - +1.4 3,685,759 - +0.2
Or see this region's nucleotide sequence