Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03154

Experiment: PYE with Phosphomycin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Phosphomycin 0.005 mg/ml
3,308,675	-		CCNA_03152	0.39	+0.7
3,308,711	+		CCNA_03152	0.48	-1.4
3,308,786	-		CCNA_03152	0.66	+0.6
3,308,794	+		CCNA_03152	0.68	+2.5
3,308,794	+		CCNA_03152	0.68	-1.3
3,308,794	+		CCNA_03152	0.68	+0.6
3,308,794	+		CCNA_03152	0.68	+0.1
3,308,802	-		CCNA_03152	0.70	+0.9
3,308,804	+		CCNA_03152	0.70	+0.0
3,308,804	+		CCNA_03152	0.70	-0.3
3,308,808	+		CCNA_03152	0.71	+0.1
3,308,808	+		CCNA_03152	0.71	-0.1
3,308,808	+		CCNA_03152	0.71	+0.2
3,308,818	+		CCNA_03152	0.73	-1.0
3,308,818	+		CCNA_03152	0.73	-1.0
3,308,818	+		CCNA_03152	0.73	+0.3
3,308,826	-		CCNA_03152	0.75	+0.7
3,308,826	-		CCNA_03152	0.75	+0.7
3,308,826	-		CCNA_03152	0.75	-0.0
3,308,828	+		CCNA_03152	0.76	+0.8
3,308,828	+		CCNA_03152	0.76	-0.1
3,308,859	-		CCNA_03152	0.83	-0.5
3,308,904	-				-0.6
3,308,922	+				+0.0
3,308,922	+				-0.2
3,308,963	-				+0.3
3,308,988	+				+0.0
3,308,990	+				-1.6
3,308,990	+				-0.5
3,308,990	+				-0.9
3,309,044	+		CCNA_03153	0.17	-2.1
3,309,104	+		CCNA_03153	0.25	-2.3
3,309,112	-		CCNA_03153	0.26	-1.5
3,309,160	-		CCNA_03153	0.33	-0.9
3,309,194	-		CCNA_03153	0.38	-1.6
3,309,199	-		CCNA_03153	0.39	+0.5
3,309,201	+		CCNA_03153	0.39	-1.1
3,309,204	-		CCNA_03153	0.39	-0.1
3,309,264	+		CCNA_03153	0.48	-2.1
3,309,264	+		CCNA_03153	0.48	+0.2
3,309,272	-		CCNA_03153	0.49	-0.6
3,309,272	-		CCNA_03153	0.49	+0.2
3,309,312	-		CCNA_03153	0.55	+0.2
3,309,331	-		CCNA_03153	0.57	+1.5
3,309,366	-		CCNA_03153	0.62	-0.8
3,309,400	-		CCNA_03153	0.67	-0.5
3,309,408	+		CCNA_03153	0.68	-1.8
3,309,416	-		CCNA_03153	0.69	-1.3
3,309,449	+		CCNA_03153	0.74	-1.3
3,309,486	+		CCNA_03153	0.79	+0.8
3,309,486	+		CCNA_03153	0.79	-0.8
3,309,515	-		CCNA_03153	0.83	-2.1
3,309,531	+		CCNA_03153	0.85	+1.8
3,309,536	+		CCNA_03153	0.86	+1.4
3,309,537	-		CCNA_03153	0.86	-0.2
3,309,537	-		CCNA_03153	0.86	-0.6
3,309,541	+		CCNA_03153	0.87	-2.0
3,309,596	+				-2.0
3,309,604	-				-0.7
3,309,664	+				+1.3
3,309,664	+				-1.7
3,309,672	-				+0.7
3,309,676	+				-0.2
3,309,684	+				-0.9
3,309,685	+				+1.1
3,309,692	-				+0.4
3,309,711	+				+1.1
3,309,727	+				-0.4
3,309,763	+				-2.3
3,309,763	+				-0.0
3,309,771	-				-1.1
3,309,777	+				-0.3
3,309,790	+				+0.6
3,309,810	+				+0.4
3,309,818	-		CCNA_03154	0.10	-2.4
3,309,892	+		CCNA_03154	0.15	+0.2
3,309,907	+		CCNA_03154	0.16	-0.3
3,309,932	-		CCNA_03154	0.18	-0.1
3,309,942	+		CCNA_03154	0.19	+0.9
3,309,952	+		CCNA_03154	0.19	-2.0
3,310,027	+		CCNA_03154	0.24	-0.2
3,310,028	-		CCNA_03154	0.24	-1.2
3,310,033	+		CCNA_03154	0.25	-0.9
3,310,033	+		CCNA_03154	0.25	-0.9
3,310,106	+		CCNA_03154	0.30	-0.5
3,310,215	-		CCNA_03154	0.37	-1.3
3,310,226	+		CCNA_03154	0.38	+0.3
3,310,236	+		CCNA_03154	0.38	+0.1
3,310,236	+		CCNA_03154	0.38	+0.3
3,310,236	+		CCNA_03154	0.38	-1.2
3,310,244	-		CCNA_03154	0.39	+0.4
3,310,267	+		CCNA_03154	0.40	+0.2
3,310,267	+		CCNA_03154	0.40	-0.5
3,310,267	+		CCNA_03154	0.40	-1.8
3,310,275	-		CCNA_03154	0.41	-1.6
3,310,295	-		CCNA_03154	0.42	+1.7
3,310,340	+		CCNA_03154	0.45	+0.5
3,310,348	-		CCNA_03154	0.46	+1.1
3,310,348	-		CCNA_03154	0.46	-1.3
3,310,355	+		CCNA_03154	0.46	-0.5
3,310,383	-		CCNA_03154	0.48	-0.4
3,310,421	+		CCNA_03154	0.51	-0.8
3,310,421	+		CCNA_03154	0.51	-1.4
3,310,434	-		CCNA_03154	0.52	-0.1
3,310,452	+		CCNA_03154	0.53	-0.5
3,310,455	-		CCNA_03154	0.53	-1.4
3,310,460	-		CCNA_03154	0.54	+0.3
3,310,469	+		CCNA_03154	0.54	+0.1
3,310,469	+		CCNA_03154	0.54	-1.3
3,310,469	+		CCNA_03154	0.54	+0.2
3,310,497	+		CCNA_03154	0.56	+0.4
3,310,572	+		CCNA_03154	0.61	-0.3
3,310,607	+		CCNA_03154	0.63	+0.7
3,310,628	+		CCNA_03154	0.65	+0.1
3,310,630	-		CCNA_03154	0.65	-0.7
3,310,630	-		CCNA_03154	0.65	-0.1
3,310,630	-		CCNA_03154	0.65	+0.7
3,310,630	-		CCNA_03154	0.65	-0.2
3,310,680	+		CCNA_03154	0.68	-0.3
3,310,688	-		CCNA_03154	0.69	-0.4
3,310,688	-		CCNA_03154	0.69	+0.4
3,310,688	-		CCNA_03154	0.69	-0.8
3,310,697	+		CCNA_03154	0.70	-0.1
3,310,734	+		CCNA_03154	0.72	-1.2
3,310,742	-		CCNA_03154	0.73	-1.4
3,310,766	+		CCNA_03154	0.74	-0.1
3,310,766	+		CCNA_03154	0.74	-2.5
3,310,771	+		CCNA_03154	0.74	-1.7
3,310,771	+		CCNA_03154	0.74	-0.0
3,310,774	-		CCNA_03154	0.75	+0.5
3,310,774	-		CCNA_03154	0.75	-1.7
3,310,774	-		CCNA_03154	0.75	-1.4
3,310,774	-		CCNA_03154	0.75	+0.4
3,310,774	-		CCNA_03154	0.75	+2.3
3,310,774	-		CCNA_03154	0.75	-0.9
3,310,804	-		CCNA_03154	0.77	+0.5
3,310,827	+		CCNA_03154	0.78	-0.4
3,310,852	-		CCNA_03154	0.80	+0.7
3,310,857	-		CCNA_03154	0.80	-0.8
3,310,859	-		CCNA_03154	0.80	-0.7
3,310,915	+		CCNA_03154	0.84	-0.2
3,310,934	-		CCNA_03154	0.85	-2.2
3,310,962	-		CCNA_03154	0.87	+0.2
3,310,990	+		CCNA_03154	0.89	-1.1
3,311,005	-				-0.3
3,311,040	-				-0.3
3,311,042	+				-0.6
3,311,050	-				-1.3
3,311,077	-				-0.2
3,311,077	-				-0.6
3,311,093	+				+1.2
3,311,106	+				+0.2
3,311,109	-				-0.9
3,311,168	+				+0.5
3,311,176	-				-0.6
3,311,176	-				+1.2
3,311,176	-				+0.8
3,311,176	-				-0.3
3,311,212	-				-0.7
3,311,274	+				-0.6
3,311,274	+				-0.1
3,311,287	-				+1.2
3,311,357	+				+0.7
3,311,373	+		CCNA_03155	0.12	+1.1
3,311,418	+		CCNA_03155	0.19	+1.6
3,311,418	+		CCNA_03155	0.19	+0.3
3,311,419	+		CCNA_03155	0.19	+0.0
3,311,426	-		CCNA_03155	0.20	+0.2
3,311,426	-		CCNA_03155	0.20	-0.5
3,311,431	-		CCNA_03155	0.21	+0.7
3,311,438	+		CCNA_03155	0.22	+0.5
3,311,438	+		CCNA_03155	0.22	+0.8
3,311,438	+		CCNA_03155	0.22	+1.3
3,311,446	-		CCNA_03155	0.23	+1.1
3,311,450	+		CCNA_03155	0.24	-1.1
3,311,457	+		CCNA_03155	0.25	+0.8
3,311,457	-		CCNA_03155	0.25	+0.1
3,311,482	+		CCNA_03155	0.29	+1.2
3,311,489	+		CCNA_03155	0.30	+0.8
3,311,512	+		CCNA_03155	0.34	+0.5
3,311,512	-		CCNA_03155	0.34	-0.5
3,311,512	-		CCNA_03155	0.34	-0.8
3,311,519	-		CCNA_03155	0.35	+1.5
3,311,520	-		CCNA_03155	0.35	+1.0
3,311,520	-		CCNA_03155	0.35	+2.0
3,311,522	+		CCNA_03155	0.36	+0.1
3,311,554	-		CCNA_03155	0.41	+1.3
3,311,568	+		CCNA_03155	0.43	+2.5
3,311,571	+		CCNA_03155	0.43	+0.3
3,311,618	+		CCNA_03155	0.51	-1.0
3,311,618	+		CCNA_03155	0.51	-1.7
3,311,628	+		CCNA_03155	0.52	+0.6
3,311,633	+		CCNA_03155	0.53	+0.7
3,311,743	-		CCNA_03155	0.71	+0.3
3,311,760	+		CCNA_03155	0.73	+0.5
3,311,760	+		CCNA_03155	0.73	-0.4
3,311,760	+		CCNA_03155	0.73	+1.6
3,311,760	+		CCNA_03155	0.73	+1.3
3,311,760	+		CCNA_03155	0.73	-0.1
3,311,760	+		CCNA_03155	0.73	+0.9
3,311,760	+		CCNA_03155	0.73	+0.8
3,311,768	-		CCNA_03155	0.75	-1.3
3,311,768	-		CCNA_03155	0.75	-0.8
3,311,768	-		CCNA_03155	0.75	-0.9
3,311,775	+		CCNA_03155	0.76	+0.7
3,311,804	-		CCNA_03155	0.80	-0.0
3,311,817	+		CCNA_03155	0.82	+0.6
3,311,817	+		CCNA_03155	0.82	+0.2
3,311,875	+				+0.6
3,311,879	+				+0.6
3,311,883	-				+0.9
3,311,887	-				-2.2
3,311,887	-				+0.3
3,311,908	-				+0.9
3,311,929	-				-1.1
3,311,959	-				-0.2
3,311,964	-				-0.3
3,312,006	+		CCNA_03156	0.13	-1.7
3,312,006	+		CCNA_03156	0.13	+0.5
3,312,013	-		CCNA_03156	0.15	+6.2
3,312,014	-		CCNA_03156	0.15	+0.7
3,312,036	+		CCNA_03156	0.19	+1.0
3,312,126	-		CCNA_03156	0.36	-1.1