Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02662 and CCNA_02663 are separated by 128 nucleotides CCNA_02663 and CCNA_02664 are separated by 211 nucleotides CCNA_02664 and CCNA_02665 are separated by 230 nucleotides
CCNA_02662: CCNA_02662 - M28-family zinc peptidase, at 2,815,723 to 2,817,327
_02662
CCNA_02663: CCNA_02663 - DnaK suppressor protein DksA, at 2,817,456 to 2,817,884
_02663
CCNA_02664: CCNA_02664 - flagellar assembly regulator FliX, at 2,818,096 to 2,818,530
_02664
CCNA_02665: CCNA_02665 - flagellar P-ring protein FlgI, at 2,818,761 to 2,819,873
_02665
Position (kb)
2817
2818 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2816.496 kb on + strand, within CCNA_02662 at 2816.512 kb on - strand, within CCNA_02662 at 2816.529 kb on - strand, within CCNA_02662 at 2816.679 kb on - strand, within CCNA_02662 at 2816.694 kb on + strand, within CCNA_02662 at 2816.694 kb on + strand, within CCNA_02662 at 2816.732 kb on - strand, within CCNA_02662 at 2816.746 kb on - strand, within CCNA_02662 at 2816.772 kb on - strand, within CCNA_02662 at 2816.783 kb on - strand, within CCNA_02662 at 2816.846 kb on + strand, within CCNA_02662 at 2816.847 kb on - strand, within CCNA_02662 at 2816.865 kb on + strand, within CCNA_02662 at 2816.873 kb on - strand, within CCNA_02662 at 2816.873 kb on - strand, within CCNA_02662 at 2816.905 kb on + strand, within CCNA_02662 at 2816.910 kb on + strand, within CCNA_02662 at 2816.911 kb on + strand, within CCNA_02662 at 2816.913 kb on - strand, within CCNA_02662 at 2816.913 kb on - strand, within CCNA_02662 at 2816.913 kb on - strand, within CCNA_02662 at 2816.913 kb on - strand, within CCNA_02662 at 2816.918 kb on - strand, within CCNA_02662 at 2816.926 kb on + strand, within CCNA_02662 at 2816.948 kb on + strand, within CCNA_02662 at 2816.956 kb on - strand, within CCNA_02662 at 2816.958 kb on - strand, within CCNA_02662 at 2817.016 kb on + strand, within CCNA_02662 at 2817.017 kb on + strand, within CCNA_02662 at 2817.027 kb on + strand, within CCNA_02662 at 2817.035 kb on - strand, within CCNA_02662 at 2817.047 kb on + strand, within CCNA_02662 at 2817.047 kb on + strand at 2817.055 kb on + strand, within CCNA_02662 at 2817.055 kb on - strand, within CCNA_02662 at 2817.097 kb on - strand, within CCNA_02662 at 2817.154 kb on + strand, within CCNA_02662 at 2817.162 kb on - strand, within CCNA_02662 at 2817.162 kb on - strand, within CCNA_02662 at 2817.162 kb on - strand, within CCNA_02662 at 2817.167 kb on + strand at 2817.206 kb on + strand at 2817.206 kb on + strand at 2817.206 kb on + strand at 2817.207 kb on - strand at 2817.214 kb on - strand at 2817.233 kb on + strand at 2817.241 kb on + strand at 2817.241 kb on + strand at 2817.249 kb on - strand at 2817.292 kb on + strand at 2817.354 kb on + strand at 2817.354 kb on + strand at 2817.367 kb on - strand at 2817.387 kb on + strand at 2817.395 kb on - strand at 2817.395 kb on - strand at 2817.409 kb on - strand at 2817.409 kb on - strand at 2817.442 kb on + strand at 2817.455 kb on - strand at 2817.503 kb on - strand, within CCNA_02663 at 2817.603 kb on + strand, within CCNA_02663 at 2817.611 kb on - strand, within CCNA_02663 at 2817.657 kb on + strand, within CCNA_02663 at 2817.660 kb on - strand, within CCNA_02663 at 2817.667 kb on - strand, within CCNA_02663 at 2817.676 kb on + strand, within CCNA_02663 at 2817.686 kb on + strand, within CCNA_02663 at 2817.900 kb on + strand at 2817.906 kb on - strand at 2817.933 kb on + strand at 2817.966 kb on - strand at 2818.022 kb on + strand at 2818.027 kb on + strand at 2818.027 kb on + strand at 2818.027 kb on + strand at 2818.030 kb on - strand at 2818.080 kb on - strand at 2818.106 kb on - strand at 2818.106 kb on - strand at 2818.106 kb on - strand at 2818.108 kb on + strand at 2818.133 kb on - strand at 2818.153 kb on + strand, within CCNA_02664 at 2818.187 kb on + strand, within CCNA_02664 at 2818.252 kb on + strand, within CCNA_02664 at 2818.265 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.332 kb on - strand, within CCNA_02664 at 2818.388 kb on - strand, within CCNA_02664 at 2818.523 kb on + strand at 2818.560 kb on + strand at 2818.568 kb on - strand at 2818.579 kb on + strand at 2818.584 kb on + strand at 2818.609 kb on + strand at 2818.625 kb on + strand at 2818.630 kb on + strand at 2818.684 kb on + strand at 2818.753 kb on + strand at 2818.758 kb on + strand at 2818.758 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.785 kb on + strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.793 kb on - strand at 2818.802 kb on - strand at 2818.807 kb on + strand at 2818.830 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 2,816,496 + CCNA_02662 0.48 +0.3 2,816,512 - CCNA_02662 0.49 -1.4 2,816,529 - CCNA_02662 0.50 -1.5 2,816,679 - CCNA_02662 0.60 +2.4 2,816,694 + CCNA_02662 0.60 -0.1 2,816,694 + CCNA_02662 0.60 -0.1 2,816,732 - CCNA_02662 0.63 -0.8 2,816,746 - CCNA_02662 0.64 +1.0 2,816,772 - CCNA_02662 0.65 -0.7 2,816,783 - CCNA_02662 0.66 -0.1 2,816,846 + CCNA_02662 0.70 +0.0 2,816,847 - CCNA_02662 0.70 -0.2 2,816,865 + CCNA_02662 0.71 -0.9 2,816,873 - CCNA_02662 0.72 -1.0 2,816,873 - CCNA_02662 0.72 -0.2 2,816,905 + CCNA_02662 0.74 +2.4 2,816,910 + CCNA_02662 0.74 -0.1 2,816,911 + CCNA_02662 0.74 -0.9 2,816,913 - CCNA_02662 0.74 +0.8 2,816,913 - CCNA_02662 0.74 -1.6 2,816,913 - CCNA_02662 0.74 +1.4 2,816,913 - CCNA_02662 0.74 -0.4 2,816,918 - CCNA_02662 0.74 -1.9 2,816,926 + CCNA_02662 0.75 +2.2 2,816,948 + CCNA_02662 0.76 +0.3 2,816,956 - CCNA_02662 0.77 -0.2 2,816,958 - CCNA_02662 0.77 +0.8 2,817,016 + CCNA_02662 0.81 -0.4 2,817,017 + CCNA_02662 0.81 -1.6 2,817,027 + CCNA_02662 0.81 -0.7 2,817,035 - CCNA_02662 0.82 +0.3 2,817,047 + CCNA_02662 0.82 +1.9 2,817,047 + +2.4 2,817,055 + CCNA_02662 0.83 -0.4 2,817,055 - CCNA_02662 0.83 +0.2 2,817,097 - CCNA_02662 0.86 -0.8 2,817,154 + CCNA_02662 0.89 -1.9 2,817,162 - CCNA_02662 0.90 +0.1 2,817,162 - CCNA_02662 0.90 -0.5 2,817,162 - CCNA_02662 0.90 +1.2 2,817,167 + -0.7 2,817,206 + -0.1 2,817,206 + +0.9 2,817,206 + -1.8 2,817,207 - -0.6 2,817,214 - +0.3 2,817,233 + +1.2 2,817,241 + -0.8 2,817,241 + +2.1 2,817,249 - +0.7 2,817,292 + -0.1 2,817,354 + +0.6 2,817,354 + +0.2 2,817,367 - -0.6 2,817,387 + -1.1 2,817,395 - -0.6 2,817,395 - -0.4 2,817,409 - +0.4 2,817,409 - +0.2 2,817,442 + -1.3 2,817,455 - -0.5 2,817,503 - CCNA_02663 0.11 -2.0 2,817,603 + CCNA_02663 0.34 +0.1 2,817,611 - CCNA_02663 0.36 -2.2 2,817,657 + CCNA_02663 0.47 +0.0 2,817,660 - CCNA_02663 0.48 -0.2 2,817,667 - CCNA_02663 0.49 -0.3 2,817,676 + CCNA_02663 0.51 -0.1 2,817,686 + CCNA_02663 0.54 -0.8 2,817,900 + -1.3 2,817,906 - -1.4 2,817,933 + -1.3 2,817,966 - -1.9 2,818,022 + -0.2 2,818,027 + -1.6 2,818,027 + -1.1 2,818,027 + -0.9 2,818,030 - +2.4 2,818,080 - +0.6 2,818,106 - +1.8 2,818,106 - +0.4 2,818,106 - -0.0 2,818,108 + +0.3 2,818,133 - -0.1 2,818,153 + CCNA_02664 0.13 +0.6 2,818,187 + CCNA_02664 0.21 +0.0 2,818,252 + CCNA_02664 0.36 +0.9 2,818,265 - CCNA_02664 0.39 +1.9 2,818,332 - CCNA_02664 0.54 +1.7 2,818,332 - CCNA_02664 0.54 -1.6 2,818,332 - CCNA_02664 0.54 -0.0 2,818,388 - CCNA_02664 0.67 +0.5 2,818,523 + +1.0 2,818,560 + +0.1 2,818,568 - -1.9 2,818,579 + +0.0 2,818,584 + +0.7 2,818,609 + +3.2 2,818,625 + +1.7 2,818,630 + -0.8 2,818,684 + -1.2 2,818,753 + -1.2 2,818,758 + +1.4 2,818,758 + +1.0 2,818,785 + -1.7 2,818,785 + +0.8 2,818,785 + -0.1 2,818,785 + +1.8 2,818,793 - +1.2 2,818,793 - +1.2 2,818,793 - +0.1 2,818,802 - +1.7 2,818,807 + +1.2 2,818,830 + +0.2
Or see this region's nucleotide sequence