Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02620

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02619 and CCNA_02620 are separated by 78 nucleotidesCCNA_02620 and CCNA_02621 are separated by 125 nucleotides CCNA_02619: CCNA_02619 - stomatin/prohibitin-related protein, at 2,767,206 to 2,768,111 _02619 CCNA_02620: CCNA_02620 - hypothetical protein, at 2,768,190 to 2,768,480 _02620 CCNA_02621: CCNA_02621 - CAAX amino terminal protease family, at 2,768,606 to 2,769,535 _02621 Position (kb) 2768 2769Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2767.209 kb on + strandat 2767.276 kb on - strandat 2767.282 kb on - strandat 2767.282 kb on - strandat 2767.287 kb on + strandat 2767.295 kb on - strandat 2767.332 kb on - strand, within CCNA_02619at 2767.342 kb on + strand, within CCNA_02619at 2767.346 kb on + strand, within CCNA_02619at 2767.349 kb on - strand, within CCNA_02619at 2767.359 kb on + strand, within CCNA_02619at 2767.364 kb on + strand, within CCNA_02619at 2767.398 kb on - strand, within CCNA_02619at 2767.398 kb on - strand, within CCNA_02619at 2767.409 kb on + strand, within CCNA_02619at 2767.422 kb on - strand, within CCNA_02619at 2767.435 kb on + strand, within CCNA_02619at 2767.435 kb on + strand, within CCNA_02619at 2767.450 kb on + strand, within CCNA_02619at 2767.450 kb on + strand, within CCNA_02619at 2767.450 kb on + strand, within CCNA_02619at 2767.456 kb on - strand, within CCNA_02619at 2767.458 kb on - strand, within CCNA_02619at 2767.472 kb on + strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.492 kb on + strand, within CCNA_02619at 2767.495 kb on - strand, within CCNA_02619at 2767.499 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.500 kb on - strand, within CCNA_02619at 2767.505 kb on - strand, within CCNA_02619at 2767.520 kb on + strand, within CCNA_02619at 2767.586 kb on + strand, within CCNA_02619at 2767.609 kb on - strand, within CCNA_02619at 2767.617 kb on + strand, within CCNA_02619at 2767.624 kb on + strand, within CCNA_02619at 2767.625 kb on + strand, within CCNA_02619at 2767.628 kb on + strand, within CCNA_02619at 2767.733 kb on - strand, within CCNA_02619at 2767.734 kb on + strand, within CCNA_02619at 2767.741 kb on - strand, within CCNA_02619at 2767.769 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.770 kb on + strand, within CCNA_02619at 2767.777 kb on - strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.778 kb on - strand, within CCNA_02619at 2767.831 kb on + strand, within CCNA_02619at 2767.857 kb on - strand, within CCNA_02619at 2767.871 kb on + strand, within CCNA_02619at 2767.871 kb on + strand, within CCNA_02619at 2767.877 kb on + strand, within CCNA_02619at 2767.877 kb on + strand, within CCNA_02619at 2767.885 kb on - strand, within CCNA_02619at 2767.885 kb on - strand, within CCNA_02619at 2767.885 kb on - strand, within CCNA_02619at 2767.938 kb on + strand, within CCNA_02619at 2767.943 kb on + strand, within CCNA_02619at 2767.946 kb on - strand, within CCNA_02619at 2767.964 kb on + strand, within CCNA_02619at 2767.991 kb on + strand, within CCNA_02619at 2768.065 kb on + strandat 2768.078 kb on - strandat 2768.142 kb on + strandat 2768.243 kb on + strand, within CCNA_02620at 2768.272 kb on + strand, within CCNA_02620at 2768.285 kb on - strand, within CCNA_02620at 2768.359 kb on + strand, within CCNA_02620at 2768.389 kb on - strand, within CCNA_02620at 2768.409 kb on + strand, within CCNA_02620at 2768.426 kb on - strand, within CCNA_02620at 2768.475 kb on + strandat 2768.483 kb on - strandat 2768.492 kb on + strandat 2768.500 kb on - strandat 2768.500 kb on - strandat 2768.600 kb on - strandat 2768.604 kb on + strandat 2768.612 kb on - strandat 2768.621 kb on - strandat 2768.623 kb on + strandat 2768.636 kb on - strandat 2768.636 kb on - strandat 2768.637 kb on + strandat 2768.683 kb on - strandat 2768.688 kb on - strandat 2768.799 kb on + strand, within CCNA_02621at 2768.807 kb on - strand, within CCNA_02621at 2768.827 kb on + strand, within CCNA_02621at 2768.835 kb on - strand, within CCNA_02621at 2768.835 kb on - strand, within CCNA_02621at 2768.836 kb on - strand, within CCNA_02621at 2768.909 kb on - strand, within CCNA_02621at 2768.945 kb on + strand, within CCNA_02621at 2768.950 kb on + strand, within CCNA_02621at 2768.958 kb on - strand, within CCNA_02621at 2768.997 kb on - strand, within CCNA_02621at 2769.014 kb on - strand, within CCNA_02621at 2769.027 kb on + strand, within CCNA_02621at 2769.035 kb on - strand, within CCNA_02621at 2769.063 kb on + strand, within CCNA_02621at 2769.066 kb on - strand, within CCNA_02621at 2769.071 kb on - strand, within CCNA_02621at 2769.107 kb on + strand, within CCNA_02621at 2769.137 kb on + strand, within CCNA_02621at 2769.137 kb on + strand, within CCNA_02621at 2769.137 kb on + strand, within CCNA_02621at 2769.145 kb on - strand, within CCNA_02621at 2769.145 kb on - strand, within CCNA_02621at 2769.145 kb on - strand, within CCNA_02621at 2769.185 kb on - strand, within CCNA_02621at 2769.187 kb on + strand, within CCNA_02621at 2769.195 kb on - strand, within CCNA_02621at 2769.199 kb on + strand, within CCNA_02621at 2769.200 kb on + strand, within CCNA_02621at 2769.221 kb on + strand, within CCNA_02621at 2769.224 kb on - strand, within CCNA_02621at 2769.243 kb on + strand, within CCNA_02621at 2769.251 kb on - strand, within CCNA_02621at 2769.276 kb on - strand, within CCNA_02621at 2769.276 kb on - strand, within CCNA_02621at 2769.278 kb on + strand, within CCNA_02621at 2769.296 kb on + strand, within CCNA_02621at 2769.304 kb on - strand, within CCNA_02621at 2769.321 kb on + strand, within CCNA_02621at 2769.321 kb on + strand, within CCNA_02621at 2769.327 kb on + strand, within CCNA_02621at 2769.327 kb on + strand, within CCNA_02621at 2769.327 kb on + strand, within CCNA_02621at 2769.327 kb on + strand, within CCNA_02621at 2769.329 kb on - strand, within CCNA_02621at 2769.329 kb on - strand, within CCNA_02621at 2769.334 kb on + strand, within CCNA_02621at 2769.334 kb on + strand, within CCNA_02621at 2769.353 kb on + strand, within CCNA_02621at 2769.356 kb on + strand, within CCNA_02621at 2769.388 kb on + strand, within CCNA_02621at 2769.426 kb on + strand, within CCNA_02621at 2769.428 kb on + strand, within CCNA_02621at 2769.443 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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2,767,209 + +1.9
2,767,276 - +0.5
2,767,282 - +2.0
2,767,282 - -0.5
2,767,287 + -1.5
2,767,295 - +0.4
2,767,332 - CCNA_02619 0.14 -1.0
2,767,342 + CCNA_02619 0.15 -0.2
2,767,346 + CCNA_02619 0.15 +1.0
2,767,349 - CCNA_02619 0.16 +0.4
2,767,359 + CCNA_02619 0.17 +1.1
2,767,364 + CCNA_02619 0.17 +0.0
2,767,398 - CCNA_02619 0.21 +0.9
2,767,398 - CCNA_02619 0.21 +0.2
2,767,409 + CCNA_02619 0.22 +0.8
2,767,422 - CCNA_02619 0.24 -0.5
2,767,435 + CCNA_02619 0.25 -1.4
2,767,435 + CCNA_02619 0.25 +0.5
2,767,450 + CCNA_02619 0.27 +0.3
2,767,450 + CCNA_02619 0.27 +1.2
2,767,450 + CCNA_02619 0.27 +1.1
2,767,456 - CCNA_02619 0.28 +0.6
2,767,458 - CCNA_02619 0.28 +0.7
2,767,472 + CCNA_02619 0.29 +1.2
2,767,492 + CCNA_02619 0.32 +2.0
2,767,492 + CCNA_02619 0.32 +0.8
2,767,492 + CCNA_02619 0.32 +2.3
2,767,492 + CCNA_02619 0.32 +0.9
2,767,495 - CCNA_02619 0.32 +0.7
2,767,499 - CCNA_02619 0.32 +1.6
2,767,500 - CCNA_02619 0.32 -0.8
2,767,500 - CCNA_02619 0.32 +0.8
2,767,500 - CCNA_02619 0.32 +1.1
2,767,500 - CCNA_02619 0.32 +0.8
2,767,500 - CCNA_02619 0.32 +0.7
2,767,505 - CCNA_02619 0.33 +2.1
2,767,520 + CCNA_02619 0.35 +1.4
2,767,586 + CCNA_02619 0.42 +1.3
2,767,609 - CCNA_02619 0.44 +0.7
2,767,617 + CCNA_02619 0.45 -0.1
2,767,624 + CCNA_02619 0.46 +1.2
2,767,625 + CCNA_02619 0.46 +1.4
2,767,628 + CCNA_02619 0.47 +0.7
2,767,733 - CCNA_02619 0.58 +1.0
2,767,734 + CCNA_02619 0.58 +1.4
2,767,741 - CCNA_02619 0.59 -0.9
2,767,769 + CCNA_02619 0.62 +0.8
2,767,770 + CCNA_02619 0.62 +1.2
2,767,770 + CCNA_02619 0.62 +1.8
2,767,770 + CCNA_02619 0.62 +1.8
2,767,770 + CCNA_02619 0.62 +2.6
2,767,770 + CCNA_02619 0.62 +1.3
2,767,770 + CCNA_02619 0.62 +1.5
2,767,770 + CCNA_02619 0.62 +1.7
2,767,777 - CCNA_02619 0.63 +1.0
2,767,778 - CCNA_02619 0.63 +1.8
2,767,778 - CCNA_02619 0.63 +0.9
2,767,778 - CCNA_02619 0.63 +0.0
2,767,778 - CCNA_02619 0.63 +0.5
2,767,831 + CCNA_02619 0.69 +1.6
2,767,857 - CCNA_02619 0.72 -1.6
2,767,871 + CCNA_02619 0.73 +1.0
2,767,871 + CCNA_02619 0.73 +1.0
2,767,877 + CCNA_02619 0.74 +0.2
2,767,877 + CCNA_02619 0.74 +1.3
2,767,885 - CCNA_02619 0.75 +0.6
2,767,885 - CCNA_02619 0.75 -0.6
2,767,885 - CCNA_02619 0.75 -0.2
2,767,938 + CCNA_02619 0.81 +1.2
2,767,943 + CCNA_02619 0.81 -0.0
2,767,946 - CCNA_02619 0.82 +0.5
2,767,964 + CCNA_02619 0.84 +2.3
2,767,991 + CCNA_02619 0.87 -0.4
2,768,065 + +0.9
2,768,078 - -1.6
2,768,142 + +0.5
2,768,243 + CCNA_02620 0.18 -0.5
2,768,272 + CCNA_02620 0.28 +0.3
2,768,285 - CCNA_02620 0.33 -0.3
2,768,359 + CCNA_02620 0.58 -1.9
2,768,389 - CCNA_02620 0.68 -0.9
2,768,409 + CCNA_02620 0.75 -1.3
2,768,426 - CCNA_02620 0.81 -0.6
2,768,475 + -0.6
2,768,483 - -1.0
2,768,492 + +0.5
2,768,500 - -0.5
2,768,500 - +2.0
2,768,600 - -2.5
2,768,604 + +1.3
2,768,612 - -2.3
2,768,621 - -0.4
2,768,623 + -0.8
2,768,636 - +0.7
2,768,636 - -0.6
2,768,637 + +0.6
2,768,683 - -0.6
2,768,688 - +0.6
2,768,799 + CCNA_02621 0.21 -2.2
2,768,807 - CCNA_02621 0.22 -0.8
2,768,827 + CCNA_02621 0.24 +0.0
2,768,835 - CCNA_02621 0.25 +1.0
2,768,835 - CCNA_02621 0.25 -0.5
2,768,836 - CCNA_02621 0.25 -1.4
2,768,909 - CCNA_02621 0.33 -1.4
2,768,945 + CCNA_02621 0.36 +1.5
2,768,950 + CCNA_02621 0.37 -1.2
2,768,958 - CCNA_02621 0.38 +0.0
2,768,997 - CCNA_02621 0.42 -0.5
2,769,014 - CCNA_02621 0.44 +0.3
2,769,027 + CCNA_02621 0.45 +0.3
2,769,035 - CCNA_02621 0.46 -2.0
2,769,063 + CCNA_02621 0.49 -0.9
2,769,066 - CCNA_02621 0.49 +0.1
2,769,071 - CCNA_02621 0.50 -0.7
2,769,107 + CCNA_02621 0.54 +1.2
2,769,137 + CCNA_02621 0.57 +0.3
2,769,137 + CCNA_02621 0.57 +1.3
2,769,137 + CCNA_02621 0.57 -1.0
2,769,145 - CCNA_02621 0.58 -0.7
2,769,145 - CCNA_02621 0.58 -0.3
2,769,145 - CCNA_02621 0.58 +0.1
2,769,185 - CCNA_02621 0.62 -1.0
2,769,187 + CCNA_02621 0.62 +1.5
2,769,195 - CCNA_02621 0.63 -0.7
2,769,199 + CCNA_02621 0.64 +0.7
2,769,200 + CCNA_02621 0.64 -0.9
2,769,221 + CCNA_02621 0.66 -0.5
2,769,224 - CCNA_02621 0.66 +0.1
2,769,243 + CCNA_02621 0.68 -2.9
2,769,251 - CCNA_02621 0.69 -2.4
2,769,276 - CCNA_02621 0.72 +0.3
2,769,276 - CCNA_02621 0.72 +1.0
2,769,278 + CCNA_02621 0.72 +1.6
2,769,296 + CCNA_02621 0.74 +0.6
2,769,304 - CCNA_02621 0.75 -0.2
2,769,321 + CCNA_02621 0.77 +0.6
2,769,321 + CCNA_02621 0.77 +0.7
2,769,327 + CCNA_02621 0.78 +0.1
2,769,327 + CCNA_02621 0.78 -0.9
2,769,327 + CCNA_02621 0.78 +1.2
2,769,327 + CCNA_02621 0.78 +2.8
2,769,329 - CCNA_02621 0.78 +1.9
2,769,329 - CCNA_02621 0.78 -0.4
2,769,334 + CCNA_02621 0.78 -0.9
2,769,334 + CCNA_02621 0.78 -0.3
2,769,353 + CCNA_02621 0.80 +1.0
2,769,356 + CCNA_02621 0.81 -2.9
2,769,388 + CCNA_02621 0.84 -0.1
2,769,426 + CCNA_02621 0.88 +0.5
2,769,428 + CCNA_02621 0.88 +2.8
2,769,443 + -0.7

Or see this region's nucleotide sequence