Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01793 and CCNA_01794 are separated by 12 nucleotides CCNA_01794 and CCNA_01795 are separated by 113 nucleotides CCNA_01795 and CCNA_01797 are separated by 353 nucleotides CCNA_01797 and CCNA_01799 are separated by 165 nucleotides
CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958
_01793
CCNA_01794: CCNA_01794 - enoyl-CoA hydratase/isomerase family, at 1,920,971 to 1,921,741
_01794
CCNA_01795: CCNA_01795 - phosphopyruvate hydratase, at 1,921,855 to 1,923,135
_01795
CCNA_01797: CCNA_01797 - FtsB-related septum formation initiator, at 1,923,489 to 1,923,791
_01797
CCNA_01799: CCNA_01799 - pyruvate dehydrogenase E1 component alpha subunit, at 1,923,957 to 1,924,988
_01799
Position (kb)
1921
1922
1923
1924 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8
9 at 1920.918 kb on + strand at 1920.945 kb on + strand at 1920.945 kb on + strand at 1920.945 kb on + strand at 1920.945 kb on + strand at 1920.952 kb on + strand at 1920.954 kb on + strand at 1920.954 kb on + strand at 1920.959 kb on + strand at 1920.989 kb on + strand at 1920.989 kb on + strand at 1920.989 kb on + strand at 1920.991 kb on - strand at 1921.035 kb on + strand at 1921.047 kb on + strand at 1921.047 kb on + strand at 1921.118 kb on + strand, within CCNA_01794 at 1921.152 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.157 kb on + strand, within CCNA_01794 at 1921.164 kb on + strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.165 kb on - strand, within CCNA_01794 at 1921.200 kb on + strand, within CCNA_01794 at 1921.200 kb on + strand, within CCNA_01794 at 1921.200 kb on + strand, within CCNA_01794 at 1921.236 kb on + strand, within CCNA_01794 at 1921.308 kb on + strand, within CCNA_01794 at 1921.326 kb on - strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.345 kb on + strand, within CCNA_01794 at 1921.353 kb on - strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.485 kb on + strand, within CCNA_01794 at 1921.493 kb on - strand, within CCNA_01794 at 1921.566 kb on + strand, within CCNA_01794 at 1921.646 kb on - strand, within CCNA_01794 at 1921.653 kb on + strand, within CCNA_01794 at 1921.670 kb on - strand at 1921.716 kb on + strand at 1921.758 kb on - strand at 1921.832 kb on + strand at 1921.840 kb on - strand at 1921.851 kb on + strand at 1923.118 kb on + strand at 1923.126 kb on - strand at 1923.126 kb on - strand at 1923.139 kb on + strand at 1923.140 kb on + strand at 1923.155 kb on + strand at 1923.155 kb on + strand at 1923.155 kb on + strand at 1923.163 kb on - strand at 1923.359 kb on + strand at 1923.413 kb on + strand at 1923.438 kb on - strand at 1923.483 kb on + strand at 1923.491 kb on - strand at 1923.773 kb on + strand at 1923.790 kb on + strand at 1923.805 kb on + strand at 1923.846 kb on + strand at 1923.909 kb on + strand at 1923.936 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 1,920,918 + +0.5 1,920,945 + +3.3 1,920,945 + +1.1 1,920,945 + -0.6 1,920,945 + -1.1 1,920,952 + +1.3 1,920,954 + +0.7 1,920,954 + -1.8 1,920,959 + -0.0 1,920,989 + -1.1 1,920,989 + -1.7 1,920,989 + +0.5 1,920,991 - +0.3 1,921,035 + -0.8 1,921,047 + -1.1 1,921,047 + -0.2 1,921,118 + CCNA_01794 0.19 +0.8 1,921,152 + CCNA_01794 0.23 +0.3 1,921,157 + CCNA_01794 0.24 -0.1 1,921,157 + CCNA_01794 0.24 +0.6 1,921,157 + CCNA_01794 0.24 +0.0 1,921,157 + CCNA_01794 0.24 +0.1 1,921,157 + CCNA_01794 0.24 -1.1 1,921,164 + CCNA_01794 0.25 +0.6 1,921,165 - CCNA_01794 0.25 +1.2 1,921,165 - CCNA_01794 0.25 -0.2 1,921,165 - CCNA_01794 0.25 +1.7 1,921,165 - CCNA_01794 0.25 -0.1 1,921,165 - CCNA_01794 0.25 -0.3 1,921,165 - CCNA_01794 0.25 -0.2 1,921,165 - CCNA_01794 0.25 -0.7 1,921,165 - CCNA_01794 0.25 +0.3 1,921,200 + CCNA_01794 0.30 -0.2 1,921,200 + CCNA_01794 0.30 +1.3 1,921,200 + CCNA_01794 0.30 -0.5 1,921,236 + CCNA_01794 0.34 -2.2 1,921,308 + CCNA_01794 0.44 -0.8 1,921,326 - CCNA_01794 0.46 +2.7 1,921,345 + CCNA_01794 0.49 +0.2 1,921,345 + CCNA_01794 0.49 -0.5 1,921,345 + CCNA_01794 0.49 +2.9 1,921,353 - CCNA_01794 0.50 -0.3 1,921,485 + CCNA_01794 0.67 +1.5 1,921,485 + CCNA_01794 0.67 +0.2 1,921,485 + CCNA_01794 0.67 -0.5 1,921,493 - CCNA_01794 0.68 -1.6 1,921,566 + CCNA_01794 0.77 +0.1 1,921,646 - CCNA_01794 0.88 -0.9 1,921,653 + CCNA_01794 0.88 -1.2 1,921,670 - -1.2 1,921,716 + +0.3 1,921,758 - +1.5 1,921,832 + -1.2 1,921,840 - +3.6 1,921,851 + +8.8 1,923,118 + +9.3 1,923,126 - -1.1 1,923,126 - -0.5 1,923,139 + +1.7 1,923,140 + +1.4 1,923,155 + +1.0 1,923,155 + -0.3 1,923,155 + +1.6 1,923,163 - +0.4 1,923,359 + -0.3 1,923,413 + +0.8 1,923,438 - +1.1 1,923,483 + -0.9 1,923,491 - +0.3 1,923,773 + +0.3 1,923,790 + +1.5 1,923,805 + +1.2 1,923,846 + +0.6 1,923,909 + +0.0 1,923,936 + +1.4
Or see this region's nucleotide sequence