Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01791 and CCNA_01792 are separated by 114 nucleotides CCNA_01792 and CCNA_01793 are separated by 123 nucleotides
CCNA_01791: CCNA_01791 - CTP synthase, at 1,917,887 to 1,919,539
_01791
CCNA_01792: CCNA_01792 - LSU ribosomal protein L32P, at 1,919,654 to 1,919,836
_01792
CCNA_01793: CCNA_01793 - aspartate protease, at 1,919,960 to 1,920,958
_01793
Position (kb)
1919
1920 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1919.998 kb on + strand at 1920.019 kb on + strand at 1920.027 kb on - strand at 1920.028 kb on - strand at 1920.045 kb on - strand at 1920.104 kb on - strand, within CCNA_01793 at 1920.138 kb on - strand, within CCNA_01793 at 1920.199 kb on - strand, within CCNA_01793 at 1920.220 kb on + strand, within CCNA_01793 at 1920.225 kb on + strand, within CCNA_01793 at 1920.244 kb on + strand, within CCNA_01793 at 1920.349 kb on + strand, within CCNA_01793 at 1920.352 kb on - strand, within CCNA_01793 at 1920.425 kb on - strand, within CCNA_01793 at 1920.467 kb on - strand, within CCNA_01793 at 1920.486 kb on + strand, within CCNA_01793 at 1920.494 kb on - strand, within CCNA_01793 at 1920.552 kb on + strand, within CCNA_01793 at 1920.552 kb on + strand, within CCNA_01793 at 1920.560 kb on - strand, within CCNA_01793 at 1920.583 kb on + strand, within CCNA_01793 at 1920.631 kb on + strand, within CCNA_01793 at 1920.645 kb on - strand, within CCNA_01793 at 1920.651 kb on + strand, within CCNA_01793 at 1920.659 kb on - strand, within CCNA_01793 at 1920.659 kb on - strand, within CCNA_01793 at 1920.659 kb on - strand, within CCNA_01793 at 1920.710 kb on + strand, within CCNA_01793 at 1920.790 kb on - strand, within CCNA_01793 at 1920.797 kb on + strand, within CCNA_01793 at 1920.807 kb on + strand, within CCNA_01793
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 1,919,998 + +0.3 1,920,019 + -0.7 1,920,027 - +0.4 1,920,028 - -0.4 1,920,045 - -1.1 1,920,104 - CCNA_01793 0.14 +0.8 1,920,138 - CCNA_01793 0.18 +0.3 1,920,199 - CCNA_01793 0.24 -0.8 1,920,220 + CCNA_01793 0.26 +0.7 1,920,225 + CCNA_01793 0.27 -1.0 1,920,244 + CCNA_01793 0.28 +0.1 1,920,349 + CCNA_01793 0.39 -0.5 1,920,352 - CCNA_01793 0.39 -1.3 1,920,425 - CCNA_01793 0.47 +3.0 1,920,467 - CCNA_01793 0.51 +1.7 1,920,486 + CCNA_01793 0.53 +3.7 1,920,494 - CCNA_01793 0.53 +0.6 1,920,552 + CCNA_01793 0.59 +0.0 1,920,552 + CCNA_01793 0.59 +0.2 1,920,560 - CCNA_01793 0.60 -0.2 1,920,583 + CCNA_01793 0.62 +0.1 1,920,631 + CCNA_01793 0.67 -1.8 1,920,645 - CCNA_01793 0.69 +1.4 1,920,651 + CCNA_01793 0.69 +0.6 1,920,659 - CCNA_01793 0.70 +2.8 1,920,659 - CCNA_01793 0.70 -0.8 1,920,659 - CCNA_01793 0.70 -0.5 1,920,710 + CCNA_01793 0.75 -0.2 1,920,790 - CCNA_01793 0.83 +0.6 1,920,797 + CCNA_01793 0.84 -0.1 1,920,807 + CCNA_01793 0.85 +1.3
Or see this region's nucleotide sequence