Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01578

Experiment: PYE with Phosphomycin 0.005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Phosphomycin 0.005 mg/ml
1,693,866	+		CCNA_01577	0.29	-0.1
1,693,866	+		CCNA_01577	0.29	+0.6
1,693,874	-		CCNA_01577	0.30	+1.4
1,693,884	-				+2.2
1,693,978	+		CCNA_01577	0.42	-1.4
1,694,027	-		CCNA_01577	0.48	+2.6
1,694,076	-		CCNA_01577	0.54	-0.2
1,694,086	+		CCNA_01577	0.55	-0.5
1,694,121	-		CCNA_01577	0.60	+1.6
1,694,152	+		CCNA_01577	0.63	+1.4
1,694,160	-		CCNA_01577	0.64	-0.3
1,694,190	-		CCNA_01577	0.68	-1.0
1,694,226	-		CCNA_01577	0.73	+1.0
1,694,266	-		CCNA_01577	0.77	+0.9
1,694,301	+		CCNA_01577	0.82	-1.9
1,694,301	+		CCNA_01577	0.82	-0.7
1,694,301	+		CCNA_01577	0.82	+0.3
1,694,301	+		CCNA_01577	0.82	+0.3
1,694,309	-		CCNA_01577	0.83	+0.5
1,694,311	+		CCNA_01577	0.83	+2.9
1,694,336	-		CCNA_01577	0.86	-0.4
1,694,495	-				-1.1
1,694,578	+				-0.1
1,694,578	+				+3.2
1,694,610	-				-0.3
1,694,684	+				-1.4
1,694,705	+				-0.2
1,694,722	+		CCNA_01578	0.12	+1.6
1,694,731	+		CCNA_01578	0.14	+1.5
1,694,731	+		CCNA_01578	0.14	+1.8
1,694,772	+		CCNA_01578	0.26	+0.9
1,694,772	+		CCNA_01578	0.26	+1.6
1,694,794	+		CCNA_01578	0.32	+0.5
1,694,807	+		CCNA_01578	0.35	+0.2
1,694,815	-		CCNA_01578	0.37	-0.5
1,694,866	+		CCNA_01578	0.52	+0.2
1,694,893	+		CCNA_01578	0.59	+1.3
1,694,893	+		CCNA_01578	0.59	+0.7
1,694,898	+		CCNA_01578	0.60	-1.1
1,694,909	+		CCNA_01578	0.63	-0.0
1,694,919	+		CCNA_01578	0.66	+1.7
1,694,919	+		CCNA_01578	0.66	+0.9
1,694,919	+		CCNA_01578	0.66	+0.8
1,694,919	+		CCNA_01578	0.66	+1.9
1,694,975	+		CCNA_01578	0.82	+1.6
1,695,087	+				-1.0
1,695,087	-				-0.6
1,695,090	-				+0.6
1,695,120	-				+0.2
1,695,152	+				+0.9
1,695,152	+				+0.4
1,695,160	+				-0.8
1,695,160	-				+0.8
1,695,161	-				-0.5
1,695,161	-				-0.9
1,695,207	+				+2.4
1,695,207	+				+2.7
1,695,252	+				+0.7
1,695,252	+				-0.7
1,695,252	+				-2.2
1,695,252	+				-1.0
1,695,259	-				+1.4
1,695,260	-				-0.6
1,695,260	-				+0.9
1,695,260	-				+1.2
1,695,260	-				-0.0
1,695,293	+				+0.2
1,695,311	+				+1.5
1,695,343	+				+1.0
1,695,380	+				+1.1
1,695,382	-				+0.7
1,695,422	-				-0.5
1,695,422	-				+0.5
1,695,422	-				+0.2
1,695,447	+				-1.1
1,695,474	+		CCNA_01579	0.11	+1.2
1,695,479	+		CCNA_01579	0.12	-1.6
1,695,479	+		CCNA_01579	0.12	-0.6
1,695,487	-		CCNA_01579	0.12	+0.3
1,695,492	-		CCNA_01579	0.13	-2.5
1,695,494	+		CCNA_01579	0.13	+0.3
1,695,494	+		CCNA_01579	0.13	+1.9
1,695,494	+		CCNA_01579	0.13	-0.7
1,695,494	+		CCNA_01579	0.13	+0.3
1,695,502	-		CCNA_01579	0.13	-2.4
1,695,513	+		CCNA_01579	0.14	-0.1
1,695,513	+		CCNA_01579	0.14	-0.1
1,695,521	-		CCNA_01579	0.14	+0.1
1,695,521	-		CCNA_01579	0.14	-0.7
1,695,527	-		CCNA_01579	0.15	-0.7
1,695,546	-		CCNA_01579	0.16	+0.9
1,695,581	+		CCNA_01579	0.18	-2.0
1,695,581	+		CCNA_01579	0.18	+0.2
1,695,634	+		CCNA_01579	0.22	+1.3
1,695,634	+		CCNA_01579	0.22	-0.6
1,695,634	+		CCNA_01579	0.22	+1.3
1,695,634	+		CCNA_01579	0.22	-0.8
1,695,637	-		CCNA_01579	0.22	-0.4
1,695,639	+		CCNA_01579	0.22	-0.8
1,695,639	+		CCNA_01579	0.22	+1.4
1,695,640	+		CCNA_01579	0.22	+0.9
1,695,642	-		CCNA_01579	0.22	-0.5
1,695,642	-		CCNA_01579	0.22	-0.5
1,695,642	-		CCNA_01579	0.22	-1.9
1,695,642	-		CCNA_01579	0.22	+0.2
1,695,644	+		CCNA_01579	0.23	-0.6
1,695,647	-		CCNA_01579	0.23	-0.9
1,695,756	+		CCNA_01579	0.30	+0.7
1,695,777	+		CCNA_01579	0.31	+0.2
1,695,795	-		CCNA_01579	0.33	+1.6
1,695,797	+		CCNA_01579	0.33	+1.0
1,695,797	+		CCNA_01579	0.33	+0.9
1,695,809	+		CCNA_01579	0.34	+3.0
1,695,819	-		CCNA_01579	0.34	-2.0
1,695,828	+		CCNA_01579	0.35	+0.3
1,695,836	-		CCNA_01579	0.35	-0.7
1,695,836	-		CCNA_01579	0.35	-2.1
1,695,894	-		CCNA_01579	0.39	-0.5
1,695,904	-		CCNA_01579	0.40	+1.6
1,695,948	+		CCNA_01579	0.43	-0.4
1,695,961	-		CCNA_01579	0.44	+2.6
1,695,996	+		CCNA_01579	0.46	-0.5
1,695,996	+		CCNA_01579	0.46	+1.0
1,695,996	+		CCNA_01579	0.46	-0.0
1,695,996	+		CCNA_01579	0.46	-0.4
1,695,996	+		CCNA_01579	0.46	-0.7
1,695,996	+		CCNA_01579	0.46	-2.2
1,695,996	+		CCNA_01579	0.46	+0.2
1,695,996	+		CCNA_01579	0.46	+1.3
1,695,996	+		CCNA_01579	0.46	-0.7
1,695,997	+		CCNA_01579	0.46	+0.2
1,696,001	+		CCNA_01579	0.46	+0.7
1,696,001	+		CCNA_01579	0.46	-0.8
1,696,001	+		CCNA_01579	0.46	-0.7
1,696,001	+		CCNA_01579	0.46	+1.3
1,696,001	+		CCNA_01579	0.46	+2.7
1,696,001	+		CCNA_01579	0.46	+2.3
1,696,004	-		CCNA_01579	0.46	+0.1
1,696,009	-		CCNA_01579	0.47	-1.4
1,696,020	+		CCNA_01579	0.48	-0.4