Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01330 and CCNA_01332 are separated by 204 nucleotides CCNA_01332 and CCNA_01333 are separated by 443 nucleotides
CCNA_01330: CCNA_01330 - DNA-directed RNA polymerase alpha chain, at 1,444,254 to 1,445,270
_01330
CCNA_01332: CCNA_01332 - LSU ribosomal protein L17P, at 1,445,475 to 1,445,888
_01332
CCNA_01333: CCNA_01333 - hypothetical protein, at 1,446,332 to 1,446,724
_01333
Position (kb)
1445
1446 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1445.918 kb on + strand at 1445.960 kb on + strand at 1446.001 kb on + strand at 1446.044 kb on - strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.046 kb on - strand at 1446.076 kb on - strand at 1446.076 kb on - strand at 1446.116 kb on + strand at 1446.174 kb on - strand at 1446.191 kb on + strand at 1446.197 kb on + strand at 1446.234 kb on - strand at 1446.234 kb on - strand at 1446.247 kb on + strand at 1446.348 kb on + strand at 1446.353 kb on - strand at 1446.412 kb on - strand, within CCNA_01333 at 1446.495 kb on + strand, within CCNA_01333 at 1446.577 kb on + strand, within CCNA_01333 at 1446.577 kb on + strand, within CCNA_01333 at 1446.577 kb on + strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.649 kb on - strand, within CCNA_01333 at 1446.675 kb on + strand, within CCNA_01333 at 1446.714 kb on + strand at 1446.769 kb on - strand at 1446.769 kb on - strand at 1446.813 kb on - strand at 1446.861 kb on - strand at 1446.862 kb on - strand at 1446.869 kb on + strand at 1446.887 kb on - strand at 1446.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 1,445,918 + -1.1 1,445,960 + -2.2 1,446,001 + -1.9 1,446,044 - -0.8 1,446,046 - +0.4 1,446,046 - -0.3 1,446,046 - -0.6 1,446,046 - +2.9 1,446,076 - -0.6 1,446,076 - +1.1 1,446,116 + +1.9 1,446,174 - -1.1 1,446,191 + +0.4 1,446,197 + -0.6 1,446,234 - -0.1 1,446,234 - -0.3 1,446,247 + +0.9 1,446,348 + +1.2 1,446,353 - +2.4 1,446,412 - CCNA_01333 0.20 +0.7 1,446,495 + CCNA_01333 0.41 -0.3 1,446,577 + CCNA_01333 0.62 -0.1 1,446,577 + CCNA_01333 0.62 +0.9 1,446,577 + CCNA_01333 0.62 +0.3 1,446,649 - CCNA_01333 0.81 +0.1 1,446,649 - CCNA_01333 0.81 +0.3 1,446,649 - CCNA_01333 0.81 +0.5 1,446,675 + CCNA_01333 0.87 +0.7 1,446,714 + -0.9 1,446,769 - -0.2 1,446,769 - -0.8 1,446,813 - +0.1 1,446,861 - -0.8 1,446,862 - +0.1 1,446,869 + +1.1 1,446,887 - +0.9 1,446,888 - +0.5
Or see this region's nucleotide sequence