Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00907

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00905 and CCNA_00906 are separated by 69 nucleotidesCCNA_00906 and CCNA_00907 overlap by 4 nucleotidesCCNA_00907 and CCNA_00908 overlap by 64 nucleotides CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396 _00905 CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380 _00906 CCNA_00907: CCNA_00907 - hypothetical protein, at 987,377 to 988,105 _00907 CCNA_00908: CCNA_00908 - 3-oxoacyl-(acyl-carrier-protein) synthase III, at 988,042 to 989,181 _00908 Position (kb) 987 988 989Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 986.380 kb on - strandat 986.391 kb on + strandat 986.391 kb on + strandat 986.391 kb on + strandat 986.391 kb on + strandat 986.399 kb on - strandat 986.399 kb on - strandat 986.399 kb on - strandat 986.427 kb on + strandat 986.427 kb on - strandat 986.434 kb on - strandat 986.448 kb on - strandat 986.463 kb on + strandat 986.519 kb on + strandat 986.532 kb on - strandat 986.552 kb on - strandat 986.565 kb on - strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.570 kb on - strand, within CCNA_00906at 986.583 kb on + strand, within CCNA_00906at 986.602 kb on + strand, within CCNA_00906at 986.602 kb on + strand, within CCNA_00906at 986.650 kb on - strand, within CCNA_00906at 986.666 kb on - strand, within CCNA_00906at 986.736 kb on + strand, within CCNA_00906at 986.736 kb on + strand, within CCNA_00906at 986.761 kb on + strand, within CCNA_00906at 986.761 kb on + strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.769 kb on - strand, within CCNA_00906at 986.776 kb on - strand, within CCNA_00906at 986.794 kb on + strand, within CCNA_00906at 986.806 kb on + strand, within CCNA_00906at 986.814 kb on - strand, within CCNA_00906at 986.814 kb on - strandat 986.879 kb on + strand, within CCNA_00906at 986.887 kb on - strand, within CCNA_00906at 986.933 kb on + strand, within CCNA_00906at 986.941 kb on - strand, within CCNA_00906at 986.948 kb on + strand, within CCNA_00906at 986.972 kb on + strand, within CCNA_00906at 986.972 kb on + strand, within CCNA_00906at 986.972 kb on + strand, within CCNA_00906at 986.972 kb on + strand, within CCNA_00906at 986.972 kb on + strand, within CCNA_00906at 986.980 kb on - strand, within CCNA_00906at 987.001 kb on + strand, within CCNA_00906at 987.009 kb on - strand, within CCNA_00906at 987.028 kb on + strand, within CCNA_00906at 987.030 kb on - strand, within CCNA_00906at 987.039 kb on + strand, within CCNA_00906at 987.060 kb on - strand, within CCNA_00906at 987.067 kb on - strand, within CCNA_00906at 987.074 kb on + strand, within CCNA_00906at 987.074 kb on + strand, within CCNA_00906at 987.095 kb on - strand, within CCNA_00906at 987.095 kb on - strand, within CCNA_00906at 987.095 kb on - strand, within CCNA_00906at 987.095 kb on - strand, within CCNA_00906at 987.127 kb on + strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.135 kb on - strand, within CCNA_00906at 987.142 kb on + strand, within CCNA_00906at 987.142 kb on + strand, within CCNA_00906at 987.144 kb on + strand, within CCNA_00906at 987.150 kb on - strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.152 kb on - strand, within CCNA_00906at 987.157 kb on - strand, within CCNA_00906at 987.172 kb on - strand, within CCNA_00906at 987.231 kb on - strand, within CCNA_00906at 987.242 kb on + strand, within CCNA_00906at 987.247 kb on - strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.259 kb on + strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.267 kb on - strand, within CCNA_00906at 987.282 kb on - strand, within CCNA_00906at 987.282 kb on - strand, within CCNA_00906at 987.282 kb on - strand, within CCNA_00906at 987.301 kb on + strandat 987.305 kb on + strandat 987.305 kb on + strandat 987.305 kb on + strandat 987.310 kb on + strandat 987.313 kb on - strandat 987.322 kb on + strandat 987.330 kb on - strandat 987.359 kb on + strandat 987.372 kb on - strandat 987.374 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.405 kb on + strandat 987.413 kb on - strandat 987.413 kb on - strandat 987.472 kb on - strand, within CCNA_00907at 987.477 kb on - strand, within CCNA_00907at 987.518 kb on - strand, within CCNA_00907at 987.535 kb on - strand, within CCNA_00907at 987.549 kb on - strand, within CCNA_00907at 987.567 kb on - strand, within CCNA_00907at 987.567 kb on - strand, within CCNA_00907at 987.596 kb on + strand, within CCNA_00907at 987.604 kb on - strand, within CCNA_00907at 987.607 kb on + strand, within CCNA_00907at 987.616 kb on - strand, within CCNA_00907at 987.631 kb on - strand, within CCNA_00907at 987.660 kb on - strand, within CCNA_00907at 987.666 kb on - strand, within CCNA_00907at 987.806 kb on + strand, within CCNA_00907at 987.806 kb on + strand, within CCNA_00907at 987.806 kb on - strand, within CCNA_00907at 987.814 kb on - strand, within CCNA_00907at 987.814 kb on - strand, within CCNA_00907at 987.819 kb on - strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.823 kb on + strand, within CCNA_00907at 987.830 kb on - strand, within CCNA_00907at 987.831 kb on - strand, within CCNA_00907at 987.853 kb on + strand, within CCNA_00907at 987.881 kb on - strand, within CCNA_00907at 987.886 kb on - strand, within CCNA_00907at 987.887 kb on - strand, within CCNA_00907at 987.887 kb on - strand, within CCNA_00907at 987.935 kb on - strand, within CCNA_00907at 987.935 kb on - strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.956 kb on + strand, within CCNA_00907at 987.964 kb on - strand, within CCNA_00907at 987.964 kb on - strand, within CCNA_00907at 988.060 kb on - strandat 988.060 kb on - strandat 988.062 kb on + strandat 988.070 kb on - strandat 988.100 kb on + strandat 988.105 kb on + strandat 988.111 kb on + strandat 988.120 kb on - strandat 988.129 kb on - strandat 988.129 kb on - strandat 988.136 kb on + strandat 988.144 kb on - strandat 988.155 kb on + strandat 988.165 kb on + strand, within CCNA_00908at 988.168 kb on - strand, within CCNA_00908at 988.170 kb on + strand, within CCNA_00908at 988.189 kb on - strand, within CCNA_00908at 988.198 kb on - strand, within CCNA_00908at 988.296 kb on + strand, within CCNA_00908at 988.304 kb on - strand, within CCNA_00908at 988.316 kb on + strand, within CCNA_00908at 988.322 kb on + strand, within CCNA_00908at 988.347 kb on + strand, within CCNA_00908at 988.355 kb on - strand, within CCNA_00908at 988.363 kb on + strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.384 kb on - strand, within CCNA_00908at 988.386 kb on + strand, within CCNA_00908at 988.393 kb on + strand, within CCNA_00908at 988.394 kb on - strand, within CCNA_00908at 988.404 kb on + strand, within CCNA_00908at 988.425 kb on + strand, within CCNA_00908at 988.430 kb on + strand, within CCNA_00908at 988.438 kb on - strand, within CCNA_00908at 988.456 kb on + strand, within CCNA_00908at 988.462 kb on + strand, within CCNA_00908at 988.495 kb on - strand, within CCNA_00908at 988.501 kb on - strand, within CCNA_00908at 988.510 kb on + strand, within CCNA_00908at 988.531 kb on - strand, within CCNA_00908at 988.558 kb on - strand, within CCNA_00908at 988.568 kb on - strand, within CCNA_00908at 988.580 kb on + strand, within CCNA_00908at 988.593 kb on - strand, within CCNA_00908at 988.649 kb on - strand, within CCNA_00908at 988.653 kb on + strand, within CCNA_00908at 988.677 kb on - strand, within CCNA_00908at 988.677 kb on - strand, within CCNA_00908at 988.692 kb on + strand, within CCNA_00908at 988.692 kb on + strand, within CCNA_00908at 988.692 kb on + strand, within CCNA_00908at 988.700 kb on - strand, within CCNA_00908at 988.734 kb on - strand, within CCNA_00908at 988.741 kb on + strand, within CCNA_00908at 988.741 kb on + strand, within CCNA_00908at 988.749 kb on - strand, within CCNA_00908at 988.749 kb on - strand, within CCNA_00908at 988.758 kb on + strand, within CCNA_00908at 988.766 kb on - strand, within CCNA_00908at 988.776 kb on - strand, within CCNA_00908at 988.803 kb on - strand, within CCNA_00908at 988.804 kb on - strand, within CCNA_00908at 988.860 kb on - strand, within CCNA_00908at 988.860 kb on - strand, within CCNA_00908at 988.860 kb on - strand, within CCNA_00908at 988.883 kb on - strand, within CCNA_00908at 988.893 kb on - strand, within CCNA_00908at 988.920 kb on + strand, within CCNA_00908at 988.927 kb on + strand, within CCNA_00908at 988.935 kb on - strand, within CCNA_00908at 988.935 kb on - strand, within CCNA_00908at 988.950 kb on - strand, within CCNA_00908at 988.967 kb on + strand, within CCNA_00908at 988.979 kb on + strand, within CCNA_00908at 988.984 kb on + strand, within CCNA_00908at 988.998 kb on - strand, within CCNA_00908at 989.001 kb on + strand, within CCNA_00908at 989.086 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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986,380 - -1.6
986,391 + +0.8
986,391 + +0.4
986,391 + +0.9
986,391 + -1.5
986,399 - -0.3
986,399 - +0.3
986,399 - -0.2
986,427 + -0.3
986,427 - -0.5
986,434 - -1.6
986,448 - -0.1
986,463 + +1.1
986,519 + +2.3
986,532 - +1.0
986,552 - +0.2
986,565 - CCNA_00906 0.11 +1.4
986,570 - CCNA_00906 0.11 +1.5
986,570 - CCNA_00906 0.11 +1.3
986,570 - CCNA_00906 0.11 +0.7
986,583 + CCNA_00906 0.13 +1.6
986,602 + CCNA_00906 0.15 +1.3
986,602 + CCNA_00906 0.15 -1.0
986,650 - CCNA_00906 0.20 -0.8
986,666 - CCNA_00906 0.22 +0.7
986,736 + CCNA_00906 0.30 -0.9
986,736 + CCNA_00906 0.30 +0.3
986,761 + CCNA_00906 0.32 +0.8
986,761 + CCNA_00906 0.32 +0.0
986,769 - CCNA_00906 0.33 +0.5
986,769 - CCNA_00906 0.33 -0.3
986,769 - CCNA_00906 0.33 -0.2
986,769 - CCNA_00906 0.33 -0.9
986,769 - CCNA_00906 0.33 +2.3
986,776 - CCNA_00906 0.34 -0.5
986,794 + CCNA_00906 0.36 +2.1
986,806 + CCNA_00906 0.37 +0.0
986,814 - CCNA_00906 0.38 -2.5
986,814 - +4.8
986,879 + CCNA_00906 0.45 -1.5
986,887 - CCNA_00906 0.46 -1.5
986,933 + CCNA_00906 0.51 -1.6
986,941 - CCNA_00906 0.52 -1.1
986,948 + CCNA_00906 0.53 -1.7
986,972 + CCNA_00906 0.55 +2.3
986,972 + CCNA_00906 0.55 +0.3
986,972 + CCNA_00906 0.55 -2.3
986,972 + CCNA_00906 0.55 +1.0
986,972 + CCNA_00906 0.55 +0.3
986,980 - CCNA_00906 0.56 -1.8
987,001 + CCNA_00906 0.58 -0.3
987,009 - CCNA_00906 0.59 +0.5
987,028 + CCNA_00906 0.61 -1.3
987,030 - CCNA_00906 0.62 +1.9
987,039 + CCNA_00906 0.63 -2.2
987,060 - CCNA_00906 0.65 -0.7
987,067 - CCNA_00906 0.66 +0.5
987,074 + CCNA_00906 0.66 +0.6
987,074 + CCNA_00906 0.66 -0.8
987,095 - CCNA_00906 0.69 -0.2
987,095 - CCNA_00906 0.69 -0.3
987,095 - CCNA_00906 0.69 -1.2
987,095 - CCNA_00906 0.69 +0.4
987,127 + CCNA_00906 0.72 -1.4
987,135 - CCNA_00906 0.73 -1.3
987,135 - CCNA_00906 0.73 +0.1
987,135 - CCNA_00906 0.73 -0.7
987,142 + CCNA_00906 0.74 +0.5
987,142 + CCNA_00906 0.74 -0.8
987,144 + CCNA_00906 0.74 +1.3
987,150 - CCNA_00906 0.75 +0.2
987,152 - CCNA_00906 0.75 +1.8
987,152 - CCNA_00906 0.75 +0.0
987,157 - CCNA_00906 0.76 +1.1
987,172 - CCNA_00906 0.77 -0.9
987,231 - CCNA_00906 0.84 +0.0
987,242 + CCNA_00906 0.85 -1.8
987,247 - CCNA_00906 0.85 -3.5
987,259 + CCNA_00906 0.87 -0.5
987,259 + CCNA_00906 0.87 -0.3
987,259 + CCNA_00906 0.87 +0.9
987,267 - CCNA_00906 0.88 +0.2
987,267 - CCNA_00906 0.88 +1.3
987,267 - CCNA_00906 0.88 -1.0
987,267 - CCNA_00906 0.88 -0.2
987,282 - CCNA_00906 0.89 +0.1
987,282 - CCNA_00906 0.89 -1.3
987,282 - CCNA_00906 0.89 +0.6
987,301 + -0.2
987,305 + -0.1
987,305 + +1.3
987,305 + +0.5
987,310 + +1.3
987,313 - -0.9
987,322 + +0.0
987,330 - +0.0
987,359 + +2.1
987,372 - -1.6
987,374 + -2.4
987,405 + +1.3
987,405 + +0.5
987,405 + +0.3
987,405 + -2.6
987,413 - +1.3
987,413 - +0.9
987,472 - CCNA_00907 0.13 +1.3
987,477 - CCNA_00907 0.14 +0.0
987,518 - CCNA_00907 0.19 +0.0
987,535 - CCNA_00907 0.22 -1.2
987,549 - CCNA_00907 0.24 -1.6
987,567 - CCNA_00907 0.26 -0.7
987,567 - CCNA_00907 0.26 -1.0
987,596 + CCNA_00907 0.30 +1.0
987,604 - CCNA_00907 0.31 -0.0
987,607 + CCNA_00907 0.32 -0.1
987,616 - CCNA_00907 0.33 +0.8
987,631 - CCNA_00907 0.35 -0.2
987,660 - CCNA_00907 0.39 +0.1
987,666 - CCNA_00907 0.40 -0.8
987,806 + CCNA_00907 0.59 +0.2
987,806 + CCNA_00907 0.59 +0.6
987,806 - CCNA_00907 0.59 -0.5
987,814 - CCNA_00907 0.60 -1.5
987,814 - CCNA_00907 0.60 -0.3
987,819 - CCNA_00907 0.61 -0.5
987,823 + CCNA_00907 0.61 +0.2
987,823 + CCNA_00907 0.61 -2.1
987,823 + CCNA_00907 0.61 +1.0
987,823 + CCNA_00907 0.61 +0.8
987,830 - CCNA_00907 0.62 -2.1
987,831 - CCNA_00907 0.62 +0.0
987,853 + CCNA_00907 0.65 -0.2
987,881 - CCNA_00907 0.69 -1.5
987,886 - CCNA_00907 0.70 -0.2
987,887 - CCNA_00907 0.70 +0.7
987,887 - CCNA_00907 0.70 -1.8
987,935 - CCNA_00907 0.77 -0.2
987,935 - CCNA_00907 0.77 -0.1
987,956 + CCNA_00907 0.79 -0.6
987,956 + CCNA_00907 0.79 -0.4
987,964 - CCNA_00907 0.81 +1.1
987,964 - CCNA_00907 0.81 +0.8
988,060 - -0.4
988,060 - +1.2
988,062 + -0.1
988,070 - -0.3
988,100 + +0.5
988,105 + +0.6
988,111 + -0.1
988,120 - -0.1
988,129 - -2.0
988,129 - +1.1
988,136 + +1.1
988,144 - -0.7
988,155 + +0.9
988,165 + CCNA_00908 0.11 +0.3
988,168 - CCNA_00908 0.11 -1.5
988,170 + CCNA_00908 0.11 -1.0
988,189 - CCNA_00908 0.13 -2.2
988,198 - CCNA_00908 0.14 -2.5
988,296 + CCNA_00908 0.22 -1.3
988,304 - CCNA_00908 0.23 +2.2
988,316 + CCNA_00908 0.24 -0.8
988,322 + CCNA_00908 0.25 +2.2
988,347 + CCNA_00908 0.27 +1.1
988,355 - CCNA_00908 0.27 -0.7
988,363 + CCNA_00908 0.28 -0.5
988,384 - CCNA_00908 0.30 -1.1
988,384 - CCNA_00908 0.30 +0.5
988,384 - CCNA_00908 0.30 +1.8
988,384 - CCNA_00908 0.30 +0.2
988,384 - CCNA_00908 0.30 -0.8
988,386 + CCNA_00908 0.30 -0.5
988,393 + CCNA_00908 0.31 -0.9
988,394 - CCNA_00908 0.31 -1.0
988,404 + CCNA_00908 0.32 -0.7
988,425 + CCNA_00908 0.34 +1.2
988,430 + CCNA_00908 0.34 +0.1
988,438 - CCNA_00908 0.35 -1.2
988,456 + CCNA_00908 0.36 -1.6
988,462 + CCNA_00908 0.37 -1.7
988,495 - CCNA_00908 0.40 -0.4
988,501 - CCNA_00908 0.40 +0.9
988,510 + CCNA_00908 0.41 -1.1
988,531 - CCNA_00908 0.43 -0.6
988,558 - CCNA_00908 0.45 -1.5
988,568 - CCNA_00908 0.46 +0.6
988,580 + CCNA_00908 0.47 -0.9
988,593 - CCNA_00908 0.48 -1.1
988,649 - CCNA_00908 0.53 +0.5
988,653 + CCNA_00908 0.54 +0.1
988,677 - CCNA_00908 0.56 -1.3
988,677 - CCNA_00908 0.56 +0.1
988,692 + CCNA_00908 0.57 -2.2
988,692 + CCNA_00908 0.57 -1.2
988,692 + CCNA_00908 0.57 -1.8
988,700 - CCNA_00908 0.58 -1.3
988,734 - CCNA_00908 0.61 +1.9
988,741 + CCNA_00908 0.61 -1.3
988,741 + CCNA_00908 0.61 +2.3
988,749 - CCNA_00908 0.62 +0.1
988,749 - CCNA_00908 0.62 +0.1
988,758 + CCNA_00908 0.63 -1.3
988,766 - CCNA_00908 0.64 -1.3
988,776 - CCNA_00908 0.64 +0.4
988,803 - CCNA_00908 0.67 +0.0
988,804 - CCNA_00908 0.67 -2.9
988,860 - CCNA_00908 0.72 -0.4
988,860 - CCNA_00908 0.72 -0.2
988,860 - CCNA_00908 0.72 -1.7
988,883 - CCNA_00908 0.74 +0.9
988,893 - CCNA_00908 0.75 +0.6
988,920 + CCNA_00908 0.77 -1.9
988,927 + CCNA_00908 0.78 -1.4
988,935 - CCNA_00908 0.78 +0.9
988,935 - CCNA_00908 0.78 -1.3
988,950 - CCNA_00908 0.80 -2.3
988,967 + CCNA_00908 0.81 +0.3
988,979 + CCNA_00908 0.82 +0.5
988,984 + CCNA_00908 0.83 +0.2
988,998 - CCNA_00908 0.84 -1.3
989,001 + CCNA_00908 0.84 -1.2
989,086 - +0.1

Or see this region's nucleotide sequence