Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00519

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00517 and CCNA_00518 are separated by 87 nucleotidesCCNA_00518 and CCNA_00519 are separated by 157 nucleotidesCCNA_00519 and CCNA_00520 are separated by 230 nucleotides CCNA_00517: CCNA_00517 - peptidyl-tRNA hydrolase, at 532,435 to 533,052 _00517 CCNA_00518: CCNA_00518 - LSU ribosomal protein L25P, at 533,140 to 533,733 _00518 CCNA_00519: CCNA_00519 - hypothetical protein, at 533,891 to 534,967 _00519 CCNA_00520: CCNA_00520 - ribose-phosphate pyrophosphokinase, at 535,198 to 536,136 _00520 Position (kb) 533 534 535Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 533.059 kb on + strandat 533.059 kb on + strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.067 kb on - strandat 533.069 kb on - strandat 533.137 kb on + strandat 533.183 kb on + strandat 533.183 kb on + strandat 533.191 kb on - strandat 533.191 kb on - strandat 533.191 kb on - strandat 533.191 kb on - strandat 533.342 kb on - strand, within CCNA_00518at 533.342 kb on - strand, within CCNA_00518at 533.342 kb on - strand, within CCNA_00518at 533.363 kb on - strand, within CCNA_00518at 533.363 kb on - strand, within CCNA_00518at 533.377 kb on - strand, within CCNA_00518at 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.921 kb on + strandat 533.922 kb on + strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.929 kb on - strandat 533.977 kb on + strandat 534.015 kb on - strand, within CCNA_00519at 534.015 kb on - strand, within CCNA_00519at 534.050 kb on - strand, within CCNA_00519at 534.061 kb on + strand, within CCNA_00519at 534.067 kb on + strand, within CCNA_00519at 534.067 kb on + strand, within CCNA_00519at 534.071 kb on + strand, within CCNA_00519at 534.074 kb on + strand, within CCNA_00519at 534.075 kb on - strand, within CCNA_00519at 534.118 kb on + strand, within CCNA_00519at 534.125 kb on - strand, within CCNA_00519at 534.125 kb on - strand, within CCNA_00519at 534.133 kb on + strand, within CCNA_00519at 534.154 kb on - strand, within CCNA_00519at 534.157 kb on + strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.165 kb on - strand, within CCNA_00519at 534.204 kb on + strand, within CCNA_00519at 534.206 kb on + strand, within CCNA_00519at 534.237 kb on + strand, within CCNA_00519at 534.244 kb on - strand, within CCNA_00519at 534.245 kb on - strand, within CCNA_00519at 534.245 kb on - strand, within CCNA_00519at 534.247 kb on + strand, within CCNA_00519at 534.252 kb on + strand, within CCNA_00519at 534.273 kb on - strand, within CCNA_00519at 534.280 kb on + strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.288 kb on - strand, within CCNA_00519at 534.303 kb on + strand, within CCNA_00519at 534.339 kb on + strand, within CCNA_00519at 534.349 kb on + strand, within CCNA_00519at 534.398 kb on + strand, within CCNA_00519at 534.420 kb on - strand, within CCNA_00519at 534.437 kb on + strand, within CCNA_00519at 534.468 kb on + strand, within CCNA_00519at 534.468 kb on + strand, within CCNA_00519at 534.476 kb on - strand, within CCNA_00519at 534.509 kb on + strand, within CCNA_00519at 534.517 kb on - strand, within CCNA_00519at 534.535 kb on - strand, within CCNA_00519at 534.535 kb on - strand, within CCNA_00519at 534.542 kb on - strand, within CCNA_00519at 534.542 kb on - strand, within CCNA_00519at 534.614 kb on - strand, within CCNA_00519at 534.622 kb on - strand, within CCNA_00519at 534.635 kb on + strand, within CCNA_00519at 534.650 kb on + strand, within CCNA_00519at 534.678 kb on - strand, within CCNA_00519at 534.691 kb on + strand, within CCNA_00519at 534.696 kb on + strand, within CCNA_00519at 534.706 kb on - strand, within CCNA_00519at 534.734 kb on - strand, within CCNA_00519at 534.734 kb on - strand, within CCNA_00519at 534.745 kb on + strand, within CCNA_00519at 534.753 kb on + strand, within CCNA_00519at 534.803 kb on - strand, within CCNA_00519at 534.859 kb on - strand, within CCNA_00519at 534.890 kb on + strandat 534.891 kb on - strandat 534.898 kb on - strandat 534.946 kb on + strandat 534.951 kb on + strandat 534.983 kb on + strandat 534.989 kb on + strandat 534.999 kb on + strandat 534.999 kb on + strandat 534.999 kb on + strandat 534.999 kb on + strandat 535.118 kb on + strandat 535.131 kb on + strandat 535.131 kb on + strandat 535.139 kb on - strandat 535.139 kb on - strandat 535.187 kb on + strandat 535.199 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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533,059 + +0.6
533,059 + -2.8
533,067 - +0.5
533,067 - -0.9
533,067 - -0.6
533,067 - +1.4
533,067 - +0.5
533,069 - +0.9
533,137 + -0.9
533,183 + -0.9
533,183 + -0.5
533,191 - -0.5
533,191 - -0.3
533,191 - +2.9
533,191 - +0.3
533,342 - CCNA_00518 0.34 +0.3
533,342 - CCNA_00518 0.34 -1.1
533,342 - CCNA_00518 0.34 +0.6
533,363 - CCNA_00518 0.38 -0.5
533,363 - CCNA_00518 0.38 +1.1
533,377 - CCNA_00518 0.40 +0.4
533,921 + -1.2
533,921 + -2.1
533,921 + -1.0
533,921 + +0.7
533,921 + -1.8
533,922 + -1.0
533,929 - -0.5
533,929 - -1.3
533,929 - -0.8
533,929 - -0.2
533,977 + -0.6
534,015 - CCNA_00519 0.12 +0.2
534,015 - CCNA_00519 0.12 -0.9
534,050 - CCNA_00519 0.15 -2.0
534,061 + CCNA_00519 0.16 -1.3
534,067 + CCNA_00519 0.16 -0.2
534,067 + CCNA_00519 0.16 -1.5
534,071 + CCNA_00519 0.17 +0.8
534,074 + CCNA_00519 0.17 +1.6
534,075 - CCNA_00519 0.17 -1.8
534,118 + CCNA_00519 0.21 -1.6
534,125 - CCNA_00519 0.22 -1.3
534,125 - CCNA_00519 0.22 -1.0
534,133 + CCNA_00519 0.22 +0.0
534,154 - CCNA_00519 0.24 -2.5
534,157 + CCNA_00519 0.25 -1.1
534,165 - CCNA_00519 0.25 -1.9
534,165 - CCNA_00519 0.25 -2.1
534,204 + CCNA_00519 0.29 +0.2
534,206 + CCNA_00519 0.29 -1.1
534,237 + CCNA_00519 0.32 +0.0
534,244 - CCNA_00519 0.33 -2.6
534,245 - CCNA_00519 0.33 -2.9
534,245 - CCNA_00519 0.33 -2.8
534,247 + CCNA_00519 0.33 -2.1
534,252 + CCNA_00519 0.34 -0.1
534,273 - CCNA_00519 0.35 -0.2
534,280 + CCNA_00519 0.36 +1.0
534,288 - CCNA_00519 0.37 -3.2
534,288 - CCNA_00519 0.37 -0.6
534,288 - CCNA_00519 0.37 -4.0
534,303 + CCNA_00519 0.38 -1.0
534,339 + CCNA_00519 0.42 +0.2
534,349 + CCNA_00519 0.43 -2.4
534,398 + CCNA_00519 0.47 -0.2
534,420 - CCNA_00519 0.49 -1.0
534,437 + CCNA_00519 0.51 +0.6
534,468 + CCNA_00519 0.54 -0.7
534,468 + CCNA_00519 0.54 +0.8
534,476 - CCNA_00519 0.54 -1.1
534,509 + CCNA_00519 0.57 +0.2
534,517 - CCNA_00519 0.58 -1.1
534,535 - CCNA_00519 0.60 +0.2
534,535 - CCNA_00519 0.60 -1.4
534,542 - CCNA_00519 0.60 -1.4
534,542 - CCNA_00519 0.60 -3.0
534,614 - CCNA_00519 0.67 -2.1
534,622 - CCNA_00519 0.68 -1.8
534,635 + CCNA_00519 0.69 -0.7
534,650 + CCNA_00519 0.70 -0.5
534,678 - CCNA_00519 0.73 +0.5
534,691 + CCNA_00519 0.74 -1.1
534,696 + CCNA_00519 0.75 -2.4
534,706 - CCNA_00519 0.76 -2.4
534,734 - CCNA_00519 0.78 -2.5
534,734 - CCNA_00519 0.78 +0.2
534,745 + CCNA_00519 0.79 -1.9
534,753 + CCNA_00519 0.80 -0.6
534,803 - CCNA_00519 0.85 +0.4
534,859 - CCNA_00519 0.90 -3.1
534,890 + -2.4
534,891 - -2.3
534,898 - -3.3
534,946 + -1.0
534,951 + +1.6
534,983 + -2.8
534,989 + +0.3
534,999 + +0.7
534,999 + -0.9
534,999 + +0.1
534,999 + -0.8
535,118 + -0.2
535,131 + -1.2
535,131 + -1.1
535,139 - -0.3
535,139 - -2.2
535,187 + +1.3
535,199 - +0.3

Or see this region's nucleotide sequence