Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00473

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00472 and CCNA_00473 are separated by 104 nucleotidesCCNA_00473 and CCNA_00474 overlap by 1 nucleotides CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169 _00472 CCNA_00473: CCNA_00473 - hypothetical protein, at 488,274 to 488,768 _00473 CCNA_00474: CCNA_00474 - DNA relaxase/conjugal transfer nickase-helicase trwC, at 488,768 to 491,578 _00474 Position (kb) 488 489Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 487.283 kb on - strand, within CCNA_00472at 487.303 kb on + strand, within CCNA_00472at 487.399 kb on + strand, within CCNA_00472at 487.472 kb on + strand, within CCNA_00472at 487.487 kb on + strand, within CCNA_00472at 487.502 kb on + strand, within CCNA_00472at 487.515 kb on - strand, within CCNA_00472at 487.582 kb on + strand, within CCNA_00472at 487.586 kb on + strand, within CCNA_00472at 487.603 kb on - strand, within CCNA_00472at 487.626 kb on - strand, within CCNA_00472at 487.634 kb on - strand, within CCNA_00472at 487.635 kb on - strand, within CCNA_00472at 487.635 kb on - strand, within CCNA_00472at 487.658 kb on - strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.715 kb on - strand, within CCNA_00472at 487.729 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.799 kb on - strand, within CCNA_00472at 487.826 kb on - strand, within CCNA_00472at 487.862 kb on - strand, within CCNA_00472at 487.874 kb on + strand, within CCNA_00472at 487.881 kb on - strand, within CCNA_00472at 487.886 kb on - strand, within CCNA_00472at 487.888 kb on - strand, within CCNA_00472at 487.903 kb on - strand, within CCNA_00472at 487.932 kb on - strand, within CCNA_00472at 487.942 kb on - strand, within CCNA_00472at 487.944 kb on + strand, within CCNA_00472at 487.947 kb on - strand, within CCNA_00472at 487.952 kb on - strand, within CCNA_00472at 487.997 kb on - strand, within CCNA_00472at 487.997 kb on - strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.070 kb on - strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.081 kb on + strandat 488.089 kb on - strandat 488.103 kb on + strandat 488.129 kb on + strandat 488.135 kb on - strandat 488.137 kb on - strandat 488.137 kb on - strandat 488.137 kb on - strandat 488.137 kb on - strandat 488.137 kb on - strandat 488.173 kb on - strandat 488.216 kb on + strandat 488.218 kb on + strandat 488.224 kb on - strandat 488.228 kb on + strandat 488.228 kb on + strandat 488.248 kb on + strandat 488.290 kb on + strandat 488.340 kb on + strand, within CCNA_00473at 488.369 kb on + strand, within CCNA_00473at 488.401 kb on + strand, within CCNA_00473at 488.401 kb on + strand, within CCNA_00473at 488.401 kb on + strand, within CCNA_00473at 488.409 kb on - strand, within CCNA_00473at 488.409 kb on - strand, within CCNA_00473at 488.409 kb on - strand, within CCNA_00473at 488.443 kb on + strand, within CCNA_00473at 488.468 kb on + strand, within CCNA_00473at 488.479 kb on + strand, within CCNA_00473at 488.487 kb on + strand, within CCNA_00473at 488.495 kb on - strand, within CCNA_00473at 488.502 kb on - strand, within CCNA_00473at 488.504 kb on + strand, within CCNA_00473at 488.519 kb on + strand, within CCNA_00473at 488.524 kb on + strand, within CCNA_00473at 488.527 kb on + strand, within CCNA_00473at 488.527 kb on - strand, within CCNA_00473at 488.532 kb on + strand, within CCNA_00473at 488.532 kb on - strand, within CCNA_00473at 488.546 kb on - strand, within CCNA_00473at 488.568 kb on + strand, within CCNA_00473at 488.594 kb on - strand, within CCNA_00473at 488.604 kb on + strand, within CCNA_00473at 488.609 kb on - strand, within CCNA_00473at 488.609 kb on - strand, within CCNA_00473at 488.612 kb on - strand, within CCNA_00473at 488.617 kb on - strand, within CCNA_00473at 488.617 kb on - strand, within CCNA_00473at 488.660 kb on - strand, within CCNA_00473at 488.706 kb on - strand, within CCNA_00473at 488.706 kb on - strand, within CCNA_00473at 488.768 kb on + strandat 488.768 kb on + strandat 488.768 kb on + strandat 488.768 kb on + strandat 488.768 kb on + strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.776 kb on - strandat 488.783 kb on - strandat 488.826 kb on + strandat 488.826 kb on + strandat 488.840 kb on + strandat 488.877 kb on - strandat 488.877 kb on - strandat 488.879 kb on + strandat 488.939 kb on - strandat 488.950 kb on + strandat 488.950 kb on + strandat 488.950 kb on + strandat 488.950 kb on + strandat 488.950 kb on + strandat 488.950 kb on + strandat 488.958 kb on - strandat 488.980 kb on + strandat 488.999 kb on + strandat 489.007 kb on - strandat 489.007 kb on - strandat 489.025 kb on - strandat 489.025 kb on - strandat 489.026 kb on - strandat 489.047 kb on + strandat 489.047 kb on + strandat 489.064 kb on + strand, within CCNA_00474at 489.064 kb on + strand, within CCNA_00474at 489.064 kb on + strand, within CCNA_00474at 489.066 kb on - strand, within CCNA_00474at 489.077 kb on + strand, within CCNA_00474at 489.091 kb on - strand, within CCNA_00474at 489.097 kb on - strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.098 kb on + strand, within CCNA_00474at 489.135 kb on + strand, within CCNA_00474at 489.150 kb on + strand, within CCNA_00474at 489.151 kb on - strand, within CCNA_00474at 489.211 kb on + strand, within CCNA_00474at 489.243 kb on - strand, within CCNA_00474at 489.254 kb on - strand, within CCNA_00474at 489.266 kb on + strand, within CCNA_00474at 489.270 kb on + strand, within CCNA_00474at 489.273 kb on - strand, within CCNA_00474at 489.274 kb on - strand, within CCNA_00474at 489.300 kb on + strand, within CCNA_00474at 489.301 kb on - strand, within CCNA_00474at 489.316 kb on - strand, within CCNA_00474at 489.331 kb on - strand, within CCNA_00474at 489.373 kb on - strand, within CCNA_00474at 489.378 kb on - strand, within CCNA_00474at 489.434 kb on + strand, within CCNA_00474at 489.434 kb on + strand, within CCNA_00474at 489.454 kb on + strand, within CCNA_00474at 489.454 kb on + strand, within CCNA_00474at 489.462 kb on - strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.474 kb on + strand, within CCNA_00474at 489.482 kb on - strand, within CCNA_00474at 489.487 kb on - strand, within CCNA_00474at 489.515 kb on - strand, within CCNA_00474at 489.529 kb on + strand, within CCNA_00474at 489.562 kb on + strand, within CCNA_00474at 489.572 kb on + strand, within CCNA_00474at 489.582 kb on + strand, within CCNA_00474at 489.600 kb on - strand, within CCNA_00474at 489.608 kb on + strand, within CCNA_00474at 489.608 kb on + strand, within CCNA_00474at 489.608 kb on + strand, within CCNA_00474at 489.616 kb on - strand, within CCNA_00474at 489.660 kb on + strand, within CCNA_00474at 489.668 kb on - strand, within CCNA_00474at 489.682 kb on - strand, within CCNA_00474at 489.707 kb on - strand, within CCNA_00474at 489.709 kb on + strand, within CCNA_00474at 489.732 kb on + strand, within CCNA_00474at 489.740 kb on - strand, within CCNA_00474at 489.750 kb on + strand, within CCNA_00474at 489.768 kb on + strand, within CCNA_00474

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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487,283 - CCNA_00472 0.18 -1.5
487,303 + CCNA_00472 0.19 +0.9
487,399 + CCNA_00472 0.28 -1.8
487,472 + CCNA_00472 0.35 -0.1
487,487 + CCNA_00472 0.37 -0.4
487,502 + CCNA_00472 0.38 -0.9
487,515 - CCNA_00472 0.39 -0.9
487,582 + CCNA_00472 0.45 -0.1
487,586 + CCNA_00472 0.46 -0.8
487,603 - CCNA_00472 0.47 -2.5
487,626 - CCNA_00472 0.49 -1.0
487,634 - CCNA_00472 0.50 -2.1
487,635 - CCNA_00472 0.50 -0.5
487,635 - CCNA_00472 0.50 -1.9
487,658 - CCNA_00472 0.52 -2.1
487,664 + CCNA_00472 0.53 -1.7
487,664 + CCNA_00472 0.53 +0.4
487,664 + CCNA_00472 0.53 -0.1
487,664 + CCNA_00472 0.53 -1.8
487,664 + CCNA_00472 0.53 -0.2
487,672 - CCNA_00472 0.54 -0.2
487,672 - CCNA_00472 0.54 -2.3
487,672 - CCNA_00472 0.54 -2.4
487,672 - CCNA_00472 0.54 -1.8
487,715 - CCNA_00472 0.58 -2.5
487,729 + CCNA_00472 0.59 -2.7
487,739 + CCNA_00472 0.60 +0.9
487,749 + CCNA_00472 0.61 -1.1
487,749 + CCNA_00472 0.61 -2.7
487,799 - CCNA_00472 0.66 -2.1
487,826 - CCNA_00472 0.68 -3.2
487,862 - CCNA_00472 0.71 -1.3
487,874 + CCNA_00472 0.73 +0.7
487,881 - CCNA_00472 0.73 -1.0
487,886 - CCNA_00472 0.74 -2.2
487,888 - CCNA_00472 0.74 -1.6
487,903 - CCNA_00472 0.75 -2.1
487,932 - CCNA_00472 0.78 -1.5
487,942 - CCNA_00472 0.79 -1.0
487,944 + CCNA_00472 0.79 +0.7
487,947 - CCNA_00472 0.79 -1.2
487,952 - CCNA_00472 0.80 +0.6
487,997 - CCNA_00472 0.84 -1.4
487,997 - CCNA_00472 0.84 -0.7
488,041 - CCNA_00472 0.88 -1.8
488,041 - CCNA_00472 0.88 +1.0
488,055 + CCNA_00472 0.89 +0.7
488,055 + CCNA_00472 0.89 -1.4
488,063 - -0.8
488,063 - +0.1
488,063 - -0.5
488,063 - -2.5
488,063 - -0.1
488,063 - +1.3
488,063 - -1.3
488,070 - -0.5
488,072 + -1.9
488,072 + -0.8
488,072 + -1.3
488,072 + -2.4
488,080 - -1.3
488,080 - -1.4
488,080 - +0.9
488,080 - -1.2
488,080 - +0.1
488,081 + -0.6
488,089 - +1.7
488,103 + -1.3
488,129 + -0.1
488,135 - -0.7
488,137 - -0.1
488,137 - -3.3
488,137 - -1.2
488,137 - -2.3
488,137 - -1.3
488,173 - -0.5
488,216 + -0.7
488,218 + -0.6
488,224 - +1.3
488,228 + -1.7
488,228 + -1.2
488,248 + -0.7
488,290 + -1.8
488,340 + CCNA_00473 0.13 -1.5
488,369 + CCNA_00473 0.19 -2.0
488,401 + CCNA_00473 0.26 -1.5
488,401 + CCNA_00473 0.26 +1.5
488,401 + CCNA_00473 0.26 -0.8
488,409 - CCNA_00473 0.27 -1.1
488,409 - CCNA_00473 0.27 -0.1
488,409 - CCNA_00473 0.27 -0.6
488,443 + CCNA_00473 0.34 -0.4
488,468 + CCNA_00473 0.39 -0.3
488,479 + CCNA_00473 0.41 +0.3
488,487 + CCNA_00473 0.43 +0.4
488,495 - CCNA_00473 0.45 +0.2
488,502 - CCNA_00473 0.46 -0.9
488,504 + CCNA_00473 0.46 +1.4
488,519 + CCNA_00473 0.49 +1.4
488,524 + CCNA_00473 0.51 -0.7
488,527 + CCNA_00473 0.51 -0.1
488,527 - CCNA_00473 0.51 -1.1
488,532 + CCNA_00473 0.52 -0.8
488,532 - CCNA_00473 0.52 -1.4
488,546 - CCNA_00473 0.55 -0.4
488,568 + CCNA_00473 0.59 +0.2
488,594 - CCNA_00473 0.65 +0.3
488,604 + CCNA_00473 0.67 +1.7
488,609 - CCNA_00473 0.68 -2.1
488,609 - CCNA_00473 0.68 -0.1
488,612 - CCNA_00473 0.68 -0.5
488,617 - CCNA_00473 0.69 -0.4
488,617 - CCNA_00473 0.69 -0.5
488,660 - CCNA_00473 0.78 -0.1
488,706 - CCNA_00473 0.87 -0.1
488,706 - CCNA_00473 0.87 +0.7
488,768 + -0.1
488,768 + +1.9
488,768 + -2.0
488,768 + +2.0
488,768 + +1.0
488,776 - -1.9
488,776 - -1.4
488,776 - -0.2
488,776 - -0.9
488,776 - -0.3
488,776 - +0.2
488,776 - -0.2
488,776 - +2.2
488,776 - +0.7
488,776 - +0.3
488,783 - -1.0
488,826 + -0.1
488,826 + +1.3
488,840 + +0.3
488,877 - -0.1
488,877 - +0.3
488,879 + -0.6
488,939 - -0.5
488,950 + -1.9
488,950 + -1.5
488,950 + -0.6
488,950 + -0.3
488,950 + +2.1
488,950 + -2.2
488,958 - +0.4
488,980 + -0.0
488,999 + +0.2
489,007 - +1.4
489,007 - -2.2
489,025 - -2.2
489,025 - -1.9
489,026 - -1.4
489,047 + +0.2
489,047 + -0.9
489,064 + CCNA_00474 0.11 +0.9
489,064 + CCNA_00474 0.11 +0.2
489,064 + CCNA_00474 0.11 +0.2
489,066 - CCNA_00474 0.11 +0.6
489,077 + CCNA_00474 0.11 -2.5
489,091 - CCNA_00474 0.11 -1.4
489,097 - CCNA_00474 0.12 -0.3
489,098 + CCNA_00474 0.12 +0.4
489,098 + CCNA_00474 0.12 -0.7
489,098 + CCNA_00474 0.12 -1.1
489,098 + CCNA_00474 0.12 +0.2
489,135 + CCNA_00474 0.13 +0.1
489,150 + CCNA_00474 0.14 -1.4
489,151 - CCNA_00474 0.14 -0.4
489,211 + CCNA_00474 0.16 -1.4
489,243 - CCNA_00474 0.17 -0.8
489,254 - CCNA_00474 0.17 +2.3
489,266 + CCNA_00474 0.18 -0.9
489,270 + CCNA_00474 0.18 +2.6
489,273 - CCNA_00474 0.18 -1.2
489,274 - CCNA_00474 0.18 +0.0
489,300 + CCNA_00474 0.19 -0.6
489,301 - CCNA_00474 0.19 -1.3
489,316 - CCNA_00474 0.19 -1.5
489,331 - CCNA_00474 0.20 +1.9
489,373 - CCNA_00474 0.22 -1.4
489,378 - CCNA_00474 0.22 +0.9
489,434 + CCNA_00474 0.24 -1.1
489,434 + CCNA_00474 0.24 -1.1
489,454 + CCNA_00474 0.24 +0.6
489,454 + CCNA_00474 0.24 -0.3
489,462 - CCNA_00474 0.25 -1.1
489,474 + CCNA_00474 0.25 -0.4
489,474 + CCNA_00474 0.25 +0.9
489,474 + CCNA_00474 0.25 +0.4
489,474 + CCNA_00474 0.25 +1.3
489,474 + CCNA_00474 0.25 -1.0
489,482 - CCNA_00474 0.25 +1.5
489,487 - CCNA_00474 0.26 +0.4
489,515 - CCNA_00474 0.27 -1.4
489,529 + CCNA_00474 0.27 +1.3
489,562 + CCNA_00474 0.28 -0.1
489,572 + CCNA_00474 0.29 -1.1
489,582 + CCNA_00474 0.29 -2.5
489,600 - CCNA_00474 0.30 +1.2
489,608 + CCNA_00474 0.30 +0.2
489,608 + CCNA_00474 0.30 +0.5
489,608 + CCNA_00474 0.30 -1.7
489,616 - CCNA_00474 0.30 -0.6
489,660 + CCNA_00474 0.32 +0.5
489,668 - CCNA_00474 0.32 -0.7
489,682 - CCNA_00474 0.33 +1.0
489,707 - CCNA_00474 0.33 +0.0
489,709 + CCNA_00474 0.33 -2.4
489,732 + CCNA_00474 0.34 +2.7
489,740 - CCNA_00474 0.35 +2.0
489,750 + CCNA_00474 0.35 +1.3
489,768 + CCNA_00474 0.36 -1.4

Or see this region's nucleotide sequence