Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00471

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00470 and CCNA_00471 are separated by 26 nucleotidesCCNA_00471 and CCNA_00472 overlap by 35 nucleotides CCNA_00470: CCNA_00470 - O-antigen polymerase, at 484,789 to 486,132 _00470 CCNA_00471: CCNA_00471 - GDP-L-fucose synthase, at 486,159 to 487,127 _00471 CCNA_00472: CCNA_00472 - GDP-mannose 4,6 dehydratase, at 487,093 to 488,169 _00472 Position (kb) 486 487 488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 485.278 kb on - strand, within CCNA_00470at 485.289 kb on + strand, within CCNA_00470at 485.338 kb on - strand, within CCNA_00470at 485.338 kb on - strand, within CCNA_00470at 485.345 kb on + strand, within CCNA_00470at 485.399 kb on - strand, within CCNA_00470at 485.414 kb on - strand, within CCNA_00470at 485.416 kb on - strand, within CCNA_00470at 485.416 kb on - strand, within CCNA_00470at 485.416 kb on - strand, within CCNA_00470at 485.424 kb on + strand, within CCNA_00470at 485.430 kb on - strand, within CCNA_00470at 485.457 kb on - strand, within CCNA_00470at 485.464 kb on + strand, within CCNA_00470at 485.469 kb on + strand, within CCNA_00470at 485.469 kb on + strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.477 kb on - strand, within CCNA_00470at 485.504 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.506 kb on + strand, within CCNA_00470at 485.509 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.512 kb on - strand, within CCNA_00470at 485.514 kb on - strand, within CCNA_00470at 485.517 kb on - strand, within CCNA_00470at 485.532 kb on - strand, within CCNA_00470at 485.553 kb on + strand, within CCNA_00470at 485.561 kb on - strand, within CCNA_00470at 485.580 kb on - strand, within CCNA_00470at 485.589 kb on + strand, within CCNA_00470at 485.589 kb on + strand, within CCNA_00470at 485.665 kb on + strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.673 kb on - strand, within CCNA_00470at 485.680 kb on - strand, within CCNA_00470at 485.859 kb on - strand, within CCNA_00470at 485.879 kb on - strand, within CCNA_00470at 485.925 kb on + strand, within CCNA_00470at 486.003 kb on + strandat 486.013 kb on + strandat 486.054 kb on - strandat 486.078 kb on + strandat 486.111 kb on + strandat 486.119 kb on - strandat 486.131 kb on + strandat 486.134 kb on - strandat 486.227 kb on + strandat 486.235 kb on - strandat 486.235 kb on - strandat 486.250 kb on - strandat 486.250 kb on - strandat 486.255 kb on + strandat 486.258 kb on - strand, within CCNA_00471at 486.274 kb on + strandat 486.307 kb on + strand, within CCNA_00471at 486.315 kb on + strand, within CCNA_00471at 486.328 kb on - strand, within CCNA_00471at 486.344 kb on + strand, within CCNA_00471at 486.345 kb on + strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.376 kb on + strand, within CCNA_00471at 486.384 kb on - strand, within CCNA_00471at 486.389 kb on - strand, within CCNA_00471at 486.402 kb on - strand, within CCNA_00471at 486.444 kb on + strand, within CCNA_00471at 486.450 kb on - strand, within CCNA_00471at 486.555 kb on - strand, within CCNA_00471at 486.591 kb on + strand, within CCNA_00471at 486.599 kb on - strand, within CCNA_00471at 486.609 kb on - strand, within CCNA_00471at 486.614 kb on - strand, within CCNA_00471at 486.626 kb on + strand, within CCNA_00471at 486.626 kb on + strand, within CCNA_00471at 486.626 kb on - strand, within CCNA_00471at 486.636 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.637 kb on + strand, within CCNA_00471at 486.639 kb on - strand, within CCNA_00471at 486.644 kb on - strand, within CCNA_00471at 486.644 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.645 kb on - strand, within CCNA_00471at 486.652 kb on + strand, within CCNA_00471at 486.692 kb on + strand, within CCNA_00471at 486.693 kb on + strand, within CCNA_00471at 486.703 kb on + strand, within CCNA_00471at 486.705 kb on + strand, within CCNA_00471at 486.721 kb on - strand, within CCNA_00471at 486.742 kb on + strand, within CCNA_00471at 486.748 kb on + strand, within CCNA_00471at 486.748 kb on + strand, within CCNA_00471at 486.751 kb on - strand, within CCNA_00471at 486.774 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.779 kb on - strand, within CCNA_00471at 486.795 kb on + strand, within CCNA_00471at 486.803 kb on - strand, within CCNA_00471at 486.803 kb on - strand, within CCNA_00471at 486.885 kb on + strand, within CCNA_00471at 486.914 kb on - strand, within CCNA_00471at 486.921 kb on + strand, within CCNA_00471at 486.930 kb on + strand, within CCNA_00471at 486.956 kb on - strand, within CCNA_00471at 486.964 kb on - strand, within CCNA_00471at 486.969 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471at 486.971 kb on - strand, within CCNA_00471at 487.149 kb on + strandat 487.157 kb on - strandat 487.162 kb on - strandat 487.162 kb on - strandat 487.167 kb on - strandat 487.172 kb on - strandat 487.187 kb on - strandat 487.223 kb on - strand, within CCNA_00472at 487.228 kb on - strand, within CCNA_00472at 487.238 kb on - strand, within CCNA_00472at 487.238 kb on - strand, within CCNA_00472at 487.245 kb on + strand, within CCNA_00472at 487.250 kb on + strand, within CCNA_00472at 487.253 kb on - strand, within CCNA_00472at 487.265 kb on + strand, within CCNA_00472at 487.270 kb on + strand, within CCNA_00472at 487.270 kb on + strand, within CCNA_00472at 487.283 kb on - strand, within CCNA_00472at 487.303 kb on + strand, within CCNA_00472at 487.399 kb on + strand, within CCNA_00472at 487.472 kb on + strand, within CCNA_00472at 487.487 kb on + strand, within CCNA_00472at 487.502 kb on + strand, within CCNA_00472at 487.515 kb on - strand, within CCNA_00472at 487.582 kb on + strand, within CCNA_00472at 487.586 kb on + strand, within CCNA_00472at 487.603 kb on - strand, within CCNA_00472at 487.626 kb on - strand, within CCNA_00472at 487.634 kb on - strand, within CCNA_00472at 487.635 kb on - strand, within CCNA_00472at 487.635 kb on - strand, within CCNA_00472at 487.658 kb on - strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.664 kb on + strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.672 kb on - strand, within CCNA_00472at 487.715 kb on - strand, within CCNA_00472at 487.729 kb on + strand, within CCNA_00472at 487.739 kb on + strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.749 kb on + strand, within CCNA_00472at 487.799 kb on - strand, within CCNA_00472at 487.826 kb on - strand, within CCNA_00472at 487.862 kb on - strand, within CCNA_00472at 487.874 kb on + strand, within CCNA_00472at 487.881 kb on - strand, within CCNA_00472at 487.886 kb on - strand, within CCNA_00472at 487.888 kb on - strand, within CCNA_00472at 487.903 kb on - strand, within CCNA_00472at 487.932 kb on - strand, within CCNA_00472at 487.942 kb on - strand, within CCNA_00472at 487.944 kb on + strand, within CCNA_00472at 487.947 kb on - strand, within CCNA_00472at 487.952 kb on - strand, within CCNA_00472at 487.997 kb on - strand, within CCNA_00472at 487.997 kb on - strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.041 kb on - strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.055 kb on + strand, within CCNA_00472at 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.063 kb on - strandat 488.070 kb on - strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.072 kb on + strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.080 kb on - strandat 488.081 kb on + strandat 488.089 kb on - strandat 488.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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485,278 - CCNA_00470 0.36 -1.9
485,289 + CCNA_00470 0.37 -1.2
485,338 - CCNA_00470 0.41 -2.3
485,338 - CCNA_00470 0.41 -2.1
485,345 + CCNA_00470 0.41 -1.4
485,399 - CCNA_00470 0.45 -2.5
485,414 - CCNA_00470 0.47 -1.4
485,416 - CCNA_00470 0.47 -2.7
485,416 - CCNA_00470 0.47 -3.0
485,416 - CCNA_00470 0.47 -1.4
485,424 + CCNA_00470 0.47 -0.2
485,430 - CCNA_00470 0.48 -1.2
485,457 - CCNA_00470 0.50 -2.0
485,464 + CCNA_00470 0.50 -2.1
485,469 + CCNA_00470 0.51 -1.6
485,469 + CCNA_00470 0.51 -0.0
485,477 - CCNA_00470 0.51 -2.7
485,477 - CCNA_00470 0.51 -1.6
485,477 - CCNA_00470 0.51 -2.2
485,477 - CCNA_00470 0.51 -0.8
485,504 + CCNA_00470 0.53 -1.4
485,506 + CCNA_00470 0.53 +1.0
485,506 + CCNA_00470 0.53 -1.4
485,509 - CCNA_00470 0.54 -0.2
485,512 - CCNA_00470 0.54 -1.4
485,512 - CCNA_00470 0.54 -0.8
485,512 - CCNA_00470 0.54 -0.5
485,512 - CCNA_00470 0.54 -1.1
485,514 - CCNA_00470 0.54 +0.3
485,517 - CCNA_00470 0.54 -0.8
485,532 - CCNA_00470 0.55 -1.6
485,553 + CCNA_00470 0.57 -0.4
485,561 - CCNA_00470 0.57 -1.7
485,580 - CCNA_00470 0.59 -0.1
485,589 + CCNA_00470 0.60 -2.3
485,589 + CCNA_00470 0.60 -1.6
485,665 + CCNA_00470 0.65 +0.4
485,673 - CCNA_00470 0.66 -0.1
485,673 - CCNA_00470 0.66 -0.5
485,673 - CCNA_00470 0.66 -3.2
485,680 - CCNA_00470 0.66 -2.1
485,859 - CCNA_00470 0.80 -1.0
485,879 - CCNA_00470 0.81 -1.3
485,925 + CCNA_00470 0.85 +0.3
486,003 + +0.2
486,013 + +0.9
486,054 - -0.5
486,078 + +0.4
486,111 + -2.4
486,119 - -1.5
486,131 + -1.5
486,134 - -0.6
486,227 + +0.3
486,235 - -1.2
486,235 - -1.1
486,250 - -0.8
486,250 - -0.5
486,255 + -1.4
486,258 - CCNA_00471 0.10 -2.0
486,274 + +2.3
486,307 + CCNA_00471 0.15 +0.3
486,315 + CCNA_00471 0.16 +0.4
486,328 - CCNA_00471 0.17 -1.7
486,344 + CCNA_00471 0.19 -1.2
486,345 + CCNA_00471 0.19 -1.0
486,376 + CCNA_00471 0.22 -1.6
486,376 + CCNA_00471 0.22 +0.3
486,376 + CCNA_00471 0.22 +1.0
486,384 - CCNA_00471 0.23 -0.0
486,389 - CCNA_00471 0.24 -3.6
486,402 - CCNA_00471 0.25 -3.2
486,444 + CCNA_00471 0.29 -1.8
486,450 - CCNA_00471 0.30 -0.9
486,555 - CCNA_00471 0.41 -1.7
486,591 + CCNA_00471 0.45 +1.0
486,599 - CCNA_00471 0.45 -2.2
486,609 - CCNA_00471 0.46 -2.6
486,614 - CCNA_00471 0.47 -1.5
486,626 + CCNA_00471 0.48 -1.0
486,626 + CCNA_00471 0.48 +0.7
486,626 - CCNA_00471 0.48 -2.2
486,636 + CCNA_00471 0.49 +2.0
486,637 + CCNA_00471 0.49 -1.4
486,637 + CCNA_00471 0.49 -0.8
486,639 - CCNA_00471 0.50 +0.2
486,644 - CCNA_00471 0.50 -1.5
486,644 - CCNA_00471 0.50 +0.9
486,645 - CCNA_00471 0.50 -1.4
486,645 - CCNA_00471 0.50 -1.4
486,652 + CCNA_00471 0.51 -1.8
486,692 + CCNA_00471 0.55 -2.7
486,693 + CCNA_00471 0.55 -0.6
486,703 + CCNA_00471 0.56 -0.1
486,705 + CCNA_00471 0.56 -1.5
486,721 - CCNA_00471 0.58 -1.8
486,742 + CCNA_00471 0.60 -0.5
486,748 + CCNA_00471 0.61 -2.1
486,748 + CCNA_00471 0.61 -1.8
486,751 - CCNA_00471 0.61 -0.8
486,774 - CCNA_00471 0.63 +0.2
486,779 - CCNA_00471 0.64 -2.1
486,779 - CCNA_00471 0.64 +0.5
486,779 - CCNA_00471 0.64 -2.5
486,795 + CCNA_00471 0.66 +1.0
486,803 - CCNA_00471 0.66 -2.2
486,803 - CCNA_00471 0.66 -1.4
486,885 + CCNA_00471 0.75 -0.5
486,914 - CCNA_00471 0.78 -0.4
486,921 + CCNA_00471 0.79 -1.8
486,930 + CCNA_00471 0.80 -1.5
486,956 - CCNA_00471 0.82 -0.8
486,964 - CCNA_00471 0.83 -0.1
486,969 - CCNA_00471 0.84 -0.6
486,971 - CCNA_00471 0.84 -2.1
486,971 - CCNA_00471 0.84 -1.1
486,971 - CCNA_00471 0.84 -1.9
487,149 + -0.1
487,157 - +1.1
487,162 - +1.5
487,162 - +1.5
487,167 - +1.3
487,172 - +1.4
487,187 - -2.4
487,223 - CCNA_00472 0.12 -2.7
487,228 - CCNA_00472 0.13 -0.2
487,238 - CCNA_00472 0.13 -1.4
487,238 - CCNA_00472 0.13 -1.7
487,245 + CCNA_00472 0.14 -1.4
487,250 + CCNA_00472 0.15 +1.2
487,253 - CCNA_00472 0.15 -2.1
487,265 + CCNA_00472 0.16 -1.5
487,270 + CCNA_00472 0.16 -1.6
487,270 + CCNA_00472 0.16 -1.3
487,283 - CCNA_00472 0.18 -1.5
487,303 + CCNA_00472 0.19 +0.9
487,399 + CCNA_00472 0.28 -1.8
487,472 + CCNA_00472 0.35 -0.1
487,487 + CCNA_00472 0.37 -0.4
487,502 + CCNA_00472 0.38 -0.9
487,515 - CCNA_00472 0.39 -0.9
487,582 + CCNA_00472 0.45 -0.1
487,586 + CCNA_00472 0.46 -0.8
487,603 - CCNA_00472 0.47 -2.5
487,626 - CCNA_00472 0.49 -1.0
487,634 - CCNA_00472 0.50 -2.1
487,635 - CCNA_00472 0.50 -0.5
487,635 - CCNA_00472 0.50 -1.9
487,658 - CCNA_00472 0.52 -2.1
487,664 + CCNA_00472 0.53 -1.7
487,664 + CCNA_00472 0.53 +0.4
487,664 + CCNA_00472 0.53 -0.1
487,664 + CCNA_00472 0.53 -1.8
487,664 + CCNA_00472 0.53 -0.2
487,672 - CCNA_00472 0.54 -0.2
487,672 - CCNA_00472 0.54 -2.3
487,672 - CCNA_00472 0.54 -2.4
487,672 - CCNA_00472 0.54 -1.8
487,715 - CCNA_00472 0.58 -2.5
487,729 + CCNA_00472 0.59 -2.7
487,739 + CCNA_00472 0.60 +0.9
487,749 + CCNA_00472 0.61 -1.1
487,749 + CCNA_00472 0.61 -2.7
487,799 - CCNA_00472 0.66 -2.1
487,826 - CCNA_00472 0.68 -3.2
487,862 - CCNA_00472 0.71 -1.3
487,874 + CCNA_00472 0.73 +0.7
487,881 - CCNA_00472 0.73 -1.0
487,886 - CCNA_00472 0.74 -2.2
487,888 - CCNA_00472 0.74 -1.6
487,903 - CCNA_00472 0.75 -2.1
487,932 - CCNA_00472 0.78 -1.5
487,942 - CCNA_00472 0.79 -1.0
487,944 + CCNA_00472 0.79 +0.7
487,947 - CCNA_00472 0.79 -1.2
487,952 - CCNA_00472 0.80 +0.6
487,997 - CCNA_00472 0.84 -1.4
487,997 - CCNA_00472 0.84 -0.7
488,041 - CCNA_00472 0.88 -1.8
488,041 - CCNA_00472 0.88 +1.0
488,055 + CCNA_00472 0.89 +0.7
488,055 + CCNA_00472 0.89 -1.4
488,063 - -0.8
488,063 - +0.1
488,063 - -0.5
488,063 - -2.5
488,063 - -0.1
488,063 - +1.3
488,063 - -1.3
488,070 - -0.5
488,072 + -1.9
488,072 + -0.8
488,072 + -1.3
488,072 + -2.4
488,080 - -1.3
488,080 - -1.4
488,080 - +0.9
488,080 - -1.2
488,080 - +0.1
488,081 + -0.6
488,089 - +1.7
488,103 + -1.3

Or see this region's nucleotide sequence