Experiment: PYE with Phosphomycin 0.005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00254 and CCNA_00255 overlap by 4 nucleotides CCNA_00255 and CCNA_00256 are separated by 18 nucleotides CCNA_00256 and CCNA_00257 are separated by 118 nucleotides
CCNA_00254: CCNA_00254 - RarD family membrane permease, at 267,164 to 268,066
_00254
CCNA_00255: CCNA_00255 - esterase, at 268,063 to 269,187
_00255
CCNA_00256: CCNA_00256 - pyridoxine kinase, at 269,206 to 270,057
_00256
CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567
_00257
Position (kb) 268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 267.154 kb on + strand at 267.154 kb on + strand at 267.155 kb on + strand at 267.162 kb on - strand at 267.190 kb on - strand at 267.205 kb on - strand at 267.249 kb on + strand at 267.257 kb on - strand, within CCNA_00254 at 267.307 kb on + strand, within CCNA_00254 at 267.333 kb on + strand, within CCNA_00254 at 267.333 kb on + strand, within CCNA_00254 at 267.333 kb on + strand, within CCNA_00254 at 267.333 kb on + strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.341 kb on - strand, within CCNA_00254 at 267.345 kb on + strand, within CCNA_00254 at 267.356 kb on - strand, within CCNA_00254 at 267.363 kb on - strand, within CCNA_00254 at 267.368 kb on + strand, within CCNA_00254 at 267.374 kb on + strand, within CCNA_00254 at 267.377 kb on - strand, within CCNA_00254 at 267.393 kb on - strand, within CCNA_00254 at 267.399 kb on - strand, within CCNA_00254 at 267.443 kb on + strand, within CCNA_00254 at 267.443 kb on + strand, within CCNA_00254 at 267.443 kb on + strand, within CCNA_00254 at 267.451 kb on - strand, within CCNA_00254 at 267.451 kb on - strand, within CCNA_00254 at 267.562 kb on + strand, within CCNA_00254 at 267.570 kb on - strand, within CCNA_00254 at 267.570 kb on - strand, within CCNA_00254 at 267.645 kb on + strand, within CCNA_00254 at 267.645 kb on + strand, within CCNA_00254 at 267.650 kb on + strand, within CCNA_00254 at 267.651 kb on - strand, within CCNA_00254 at 267.653 kb on - strand, within CCNA_00254 at 267.653 kb on - strand, within CCNA_00254 at 267.653 kb on - strand, within CCNA_00254 at 267.658 kb on - strand, within CCNA_00254 at 267.658 kb on - strand, within CCNA_00254 at 267.688 kb on + strand, within CCNA_00254 at 267.688 kb on + strand, within CCNA_00254 at 267.688 kb on + strand, within CCNA_00254 at 267.688 kb on + strand, within CCNA_00254 at 267.696 kb on - strand, within CCNA_00254 at 267.708 kb on - strand, within CCNA_00254 at 267.734 kb on - strand, within CCNA_00254 at 267.746 kb on + strand, within CCNA_00254 at 267.779 kb on + strand at 267.780 kb on + strand, within CCNA_00254 at 267.843 kb on + strand, within CCNA_00254 at 267.852 kb on + strand, within CCNA_00254 at 267.860 kb on + strand, within CCNA_00254 at 267.916 kb on - strand, within CCNA_00254 at 267.937 kb on - strand, within CCNA_00254 at 267.972 kb on - strand, within CCNA_00254 at 268.010 kb on - strand at 268.059 kb on - strand at 268.062 kb on + strand at 268.069 kb on - strand at 268.072 kb on + strand at 268.281 kb on - strand, within CCNA_00255 at 268.384 kb on - strand, within CCNA_00255 at 268.615 kb on + strand, within CCNA_00255 at 268.718 kb on - strand, within CCNA_00255 at 268.765 kb on - strand, within CCNA_00255 at 269.140 kb on + strand at 269.211 kb on - strand at 269.212 kb on - strand at 269.287 kb on + strand at 269.287 kb on + strand at 269.312 kb on + strand, within CCNA_00256 at 269.320 kb on - strand, within CCNA_00256 at 269.356 kb on + strand, within CCNA_00256 at 269.388 kb on - strand, within CCNA_00256 at 269.429 kb on + strand, within CCNA_00256 at 269.433 kb on - strand, within CCNA_00256 at 269.437 kb on - strand, within CCNA_00256 at 269.437 kb on - strand, within CCNA_00256 at 269.446 kb on + strand, within CCNA_00256 at 269.454 kb on - strand, within CCNA_00256 at 269.467 kb on + strand, within CCNA_00256 at 269.467 kb on + strand, within CCNA_00256 at 269.475 kb on - strand, within CCNA_00256 at 269.475 kb on - strand, within CCNA_00256 at 269.490 kb on - strand, within CCNA_00256 at 269.490 kb on - strand, within CCNA_00256 at 269.499 kb on + strand, within CCNA_00256 at 269.507 kb on - strand, within CCNA_00256 at 269.512 kb on - strand, within CCNA_00256 at 269.512 kb on - strand, within CCNA_00256 at 269.512 kb on - strand, within CCNA_00256 at 269.527 kb on - strand, within CCNA_00256 at 269.537 kb on - strand, within CCNA_00256 at 269.573 kb on + strand, within CCNA_00256 at 269.594 kb on + strand, within CCNA_00256 at 269.600 kb on - strand, within CCNA_00256 at 269.602 kb on + strand, within CCNA_00256 at 269.608 kb on + strand, within CCNA_00256 at 269.642 kb on - strand, within CCNA_00256 at 269.666 kb on + strand, within CCNA_00256 at 269.671 kb on + strand, within CCNA_00256 at 269.671 kb on + strand, within CCNA_00256 at 269.679 kb on - strand, within CCNA_00256 at 269.679 kb on - strand, within CCNA_00256 at 269.679 kb on - strand, within CCNA_00256 at 269.679 kb on - strand, within CCNA_00256 at 269.701 kb on - strand, within CCNA_00256 at 269.717 kb on + strand, within CCNA_00256 at 269.725 kb on + strand, within CCNA_00256 at 269.725 kb on + strand, within CCNA_00256 at 269.725 kb on + strand, within CCNA_00256 at 269.725 kb on + strand, within CCNA_00256 at 269.733 kb on - strand at 269.733 kb on - strand, within CCNA_00256 at 269.733 kb on - strand, within CCNA_00256 at 269.773 kb on - strand, within CCNA_00256 at 269.773 kb on - strand, within CCNA_00256 at 269.801 kb on - strand, within CCNA_00256 at 269.819 kb on + strand, within CCNA_00256 at 269.824 kb on + strand, within CCNA_00256 at 269.827 kb on - strand, within CCNA_00256 at 269.864 kb on - strand, within CCNA_00256 at 269.872 kb on - strand, within CCNA_00256 at 269.873 kb on - strand, within CCNA_00256 at 269.876 kb on + strand, within CCNA_00256 at 269.876 kb on + strand, within CCNA_00256 at 269.876 kb on + strand, within CCNA_00256 at 269.878 kb on + strand, within CCNA_00256 at 269.884 kb on - strand, within CCNA_00256 at 269.884 kb on - strand, within CCNA_00256 at 269.884 kb on - strand, within CCNA_00256 at 269.925 kb on - strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.969 kb on + strand, within CCNA_00256 at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.977 kb on - strand at 269.979 kb on + strand at 269.979 kb on + strand at 269.987 kb on + strand at 269.987 kb on + strand at 269.992 kb on + strand at 269.992 kb on + strand at 269.995 kb on - strand at 270.000 kb on - strand at 270.000 kb on - strand at 270.000 kb on - strand at 270.000 kb on - strand at 270.000 kb on - strand at 270.000 kb on - strand at 270.000 kb on - strand at 270.010 kb on + strand at 270.064 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.084 kb on + strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.092 kb on - strand at 270.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml remove 267,154 + -0.5 267,154 + +1.3 267,155 + +1.6 267,162 - -2.1 267,190 - -0.6 267,205 - -1.1 267,249 + +0.5 267,257 - CCNA_00254 0.10 -1.6 267,307 + CCNA_00254 0.16 +1.3 267,333 + CCNA_00254 0.19 -1.4 267,333 + CCNA_00254 0.19 -0.2 267,333 + CCNA_00254 0.19 +2.5 267,333 + CCNA_00254 0.19 +0.3 267,341 - CCNA_00254 0.20 -0.9 267,341 - CCNA_00254 0.20 +0.6 267,341 - CCNA_00254 0.20 +0.8 267,341 - CCNA_00254 0.20 -0.7 267,341 - CCNA_00254 0.20 -0.8 267,341 - CCNA_00254 0.20 -2.3 267,341 - CCNA_00254 0.20 -0.9 267,341 - CCNA_00254 0.20 +0.1 267,345 + CCNA_00254 0.20 -1.6 267,356 - CCNA_00254 0.21 -2.9 267,363 - CCNA_00254 0.22 -2.4 267,368 + CCNA_00254 0.23 -0.8 267,374 + CCNA_00254 0.23 -2.5 267,377 - CCNA_00254 0.24 +0.4 267,393 - CCNA_00254 0.25 +2.7 267,399 - CCNA_00254 0.26 +1.6 267,443 + CCNA_00254 0.31 +1.2 267,443 + CCNA_00254 0.31 -2.5 267,443 + CCNA_00254 0.31 -1.7 267,451 - CCNA_00254 0.32 -1.5 267,451 - CCNA_00254 0.32 +2.5 267,562 + CCNA_00254 0.44 -3.1 267,570 - CCNA_00254 0.45 -0.5 267,570 - CCNA_00254 0.45 -1.0 267,645 + CCNA_00254 0.53 -1.8 267,645 + CCNA_00254 0.53 +0.4 267,650 + CCNA_00254 0.54 -1.3 267,651 - CCNA_00254 0.54 -0.2 267,653 - CCNA_00254 0.54 +0.1 267,653 - CCNA_00254 0.54 -0.7 267,653 - CCNA_00254 0.54 -0.7 267,658 - CCNA_00254 0.55 -0.8 267,658 - CCNA_00254 0.55 +1.7 267,688 + CCNA_00254 0.58 -1.5 267,688 + CCNA_00254 0.58 -1.3 267,688 + CCNA_00254 0.58 +2.1 267,688 + CCNA_00254 0.58 -3.0 267,696 - CCNA_00254 0.59 -1.4 267,708 - CCNA_00254 0.60 -1.5 267,734 - CCNA_00254 0.63 -0.6 267,746 + CCNA_00254 0.64 -2.6 267,779 + +1.4 267,780 + CCNA_00254 0.68 -1.8 267,843 + CCNA_00254 0.75 -0.7 267,852 + CCNA_00254 0.76 +1.1 267,860 + CCNA_00254 0.77 +0.5 267,916 - CCNA_00254 0.83 -1.5 267,937 - CCNA_00254 0.86 -1.3 267,972 - CCNA_00254 0.89 -0.5 268,010 - -0.0 268,059 - -0.5 268,062 + +1.4 268,069 - +0.1 268,072 + -0.1 268,281 - CCNA_00255 0.19 +0.3 268,384 - CCNA_00255 0.29 -0.7 268,615 + CCNA_00255 0.49 -0.3 268,718 - CCNA_00255 0.58 -0.6 268,765 - CCNA_00255 0.62 -2.1 269,140 + -0.3 269,211 - -2.0 269,212 - -2.1 269,287 + -1.0 269,287 + +1.7 269,312 + CCNA_00256 0.12 +1.5 269,320 - CCNA_00256 0.13 +0.5 269,356 + CCNA_00256 0.18 -0.6 269,388 - CCNA_00256 0.21 -0.1 269,429 + CCNA_00256 0.26 +1.5 269,433 - CCNA_00256 0.27 +0.3 269,437 - CCNA_00256 0.27 -0.6 269,437 - CCNA_00256 0.27 -0.1 269,446 + CCNA_00256 0.28 +0.0 269,454 - CCNA_00256 0.29 -0.2 269,467 + CCNA_00256 0.31 +1.6 269,467 + CCNA_00256 0.31 -1.1 269,475 - CCNA_00256 0.32 +1.8 269,475 - CCNA_00256 0.32 -0.0 269,490 - CCNA_00256 0.33 -0.0 269,490 - CCNA_00256 0.33 -0.8 269,499 + CCNA_00256 0.34 +1.9 269,507 - CCNA_00256 0.35 +1.6 269,512 - CCNA_00256 0.36 +0.7 269,512 - CCNA_00256 0.36 +0.0 269,512 - CCNA_00256 0.36 +0.3 269,527 - CCNA_00256 0.38 +0.7 269,537 - CCNA_00256 0.39 -0.4 269,573 + CCNA_00256 0.43 -0.7 269,594 + CCNA_00256 0.46 -0.7 269,600 - CCNA_00256 0.46 +1.0 269,602 + CCNA_00256 0.46 -1.0 269,608 + CCNA_00256 0.47 -1.5 269,642 - CCNA_00256 0.51 +1.8 269,666 + CCNA_00256 0.54 -1.1 269,671 + CCNA_00256 0.55 -0.1 269,671 + CCNA_00256 0.55 -1.2 269,679 - CCNA_00256 0.56 +0.0 269,679 - CCNA_00256 0.56 -1.6 269,679 - CCNA_00256 0.56 -1.4 269,679 - CCNA_00256 0.56 -0.2 269,701 - CCNA_00256 0.58 -1.9 269,717 + CCNA_00256 0.60 -1.6 269,725 + CCNA_00256 0.61 +1.5 269,725 + CCNA_00256 0.61 -1.5 269,725 + CCNA_00256 0.61 -2.5 269,725 + CCNA_00256 0.61 +1.4 269,733 - +2.1 269,733 - CCNA_00256 0.62 -1.7 269,733 - CCNA_00256 0.62 -0.1 269,773 - CCNA_00256 0.67 +0.9 269,773 - CCNA_00256 0.67 +0.3 269,801 - CCNA_00256 0.70 +0.5 269,819 + CCNA_00256 0.72 -1.6 269,824 + CCNA_00256 0.73 -0.7 269,827 - CCNA_00256 0.73 -0.4 269,864 - CCNA_00256 0.77 -0.7 269,872 - CCNA_00256 0.78 +0.9 269,873 - CCNA_00256 0.78 +1.7 269,876 + CCNA_00256 0.79 -0.7 269,876 + CCNA_00256 0.79 -0.5 269,876 + CCNA_00256 0.79 -0.8 269,878 + CCNA_00256 0.79 -0.9 269,884 - CCNA_00256 0.80 -0.7 269,884 - CCNA_00256 0.80 -0.6 269,884 - CCNA_00256 0.80 -1.0 269,925 - CCNA_00256 0.84 +1.7 269,969 + CCNA_00256 0.90 -0.4 269,969 + CCNA_00256 0.90 -0.4 269,969 + CCNA_00256 0.90 -0.3 269,969 + CCNA_00256 0.90 -0.5 269,969 + CCNA_00256 0.90 -2.5 269,969 + CCNA_00256 0.90 +1.5 269,977 - -2.1 269,977 - -0.7 269,977 - -0.7 269,977 - -1.4 269,977 - +0.1 269,977 - +0.3 269,977 - +1.9 269,979 + -1.2 269,979 + -0.8 269,987 + -0.8 269,987 + -1.5 269,992 + -1.5 269,992 + -1.9 269,995 - -1.3 270,000 - -0.8 270,000 - -0.5 270,000 - -1.4 270,000 - -0.3 270,000 - -0.9 270,000 - +0.4 270,000 - -1.9 270,010 + +1.3 270,064 + -1.0 270,084 + +0.8 270,084 + -0.2 270,084 + -2.0 270,084 + -0.0 270,084 + +0.0 270,084 + -1.3 270,092 - -1.2 270,092 - -0.0 270,092 - +1.9 270,092 - -2.5 270,092 - -0.7 270,092 - -0.6 270,092 - -1.6 270,092 - +1.2 270,092 - -0.5 270,092 - +0.8 270,092 - -0.5 270,092 - -0.7 270,141 + +2.3
Or see this region's nucleotide sequence