Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00136

Experiment: PYE with Phosphomycin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00134 and CCNA_00135 are separated by 25 nucleotidesCCNA_00135 and CCNA_00136 overlap by 4 nucleotidesCCNA_00136 and CCNA_00137 are separated by 33 nucleotides CCNA_00134: CCNA_00134 - surface protein, at 143,989 to 144,417 _00134 CCNA_00135: CCNA_00135 - trypsin-like peptidase, at 144,443 to 145,276 _00135 CCNA_00136: CCNA_00136 - AmpG protein, at 145,273 to 146,952 _00136 CCNA_00137: CCNA_00137 - hybrid two-component histidine kinase/receiver protein ShkA, at 146,986 to 148,530 _00137 Position (kb) 145 146 147Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.306 kb on + strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.314 kb on - strand, within CCNA_00134at 144.368 kb on + strand, within CCNA_00134at 144.390 kb on + strandat 144.393 kb on - strandat 144.406 kb on + strandat 144.428 kb on + strandat 144.436 kb on - strandat 144.445 kb on + strandat 144.468 kb on + strandat 144.470 kb on - strandat 144.472 kb on + strandat 144.472 kb on + strandat 144.472 kb on + strandat 144.472 kb on + strandat 144.480 kb on - strandat 144.480 kb on - strandat 144.480 kb on - strandat 144.487 kb on + strandat 144.507 kb on - strandat 144.771 kb on - strand, within CCNA_00135at 144.771 kb on - strand, within CCNA_00135at 144.771 kb on - strand, within CCNA_00135at 144.794 kb on + strand, within CCNA_00135at 144.811 kb on - strand, within CCNA_00135at 144.850 kb on + strand, within CCNA_00135at 144.872 kb on + strand, within CCNA_00135at 144.880 kb on - strand, within CCNA_00135at 144.961 kb on + strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.971 kb on + strand, within CCNA_00135at 144.979 kb on - strand, within CCNA_00135at 144.979 kb on - strand, within CCNA_00135at 144.986 kb on + strand, within CCNA_00135at 145.004 kb on + strand, within CCNA_00135at 145.079 kb on - strand, within CCNA_00135at 145.108 kb on + strand, within CCNA_00135at 145.116 kb on - strand, within CCNA_00135at 145.127 kb on + strand, within CCNA_00135at 145.129 kb on + strand, within CCNA_00135at 145.129 kb on + strand, within CCNA_00135at 145.137 kb on - strand, within CCNA_00135at 145.289 kb on + strandat 145.297 kb on - strandat 145.342 kb on + strandat 145.342 kb on + strandat 145.342 kb on + strandat 145.345 kb on - strandat 145.350 kb on - strandat 145.378 kb on - strandat 145.386 kb on + strandat 145.407 kb on + strandat 145.457 kb on + strand, within CCNA_00136at 145.457 kb on + strand, within CCNA_00136at 145.457 kb on + strand, within CCNA_00136at 145.457 kb on + strand, within CCNA_00136at 145.465 kb on - strand, within CCNA_00136at 145.465 kb on - strand, within CCNA_00136at 145.465 kb on - strand, within CCNA_00136at 145.516 kb on - strand, within CCNA_00136at 145.525 kb on + strand, within CCNA_00136at 145.532 kb on + strand, within CCNA_00136at 145.552 kb on + strand, within CCNA_00136at 145.561 kb on - strand, within CCNA_00136at 145.564 kb on + strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.570 kb on - strand, within CCNA_00136at 145.587 kb on - strand, within CCNA_00136at 145.594 kb on - strand, within CCNA_00136at 145.594 kb on - strand, within CCNA_00136at 145.603 kb on + strand, within CCNA_00136at 145.603 kb on + strand, within CCNA_00136at 145.603 kb on + strand, within CCNA_00136at 145.616 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.632 kb on - strand, within CCNA_00136at 145.646 kb on - strand, within CCNA_00136at 145.655 kb on + strand, within CCNA_00136at 145.703 kb on + strand, within CCNA_00136at 145.774 kb on - strand, within CCNA_00136at 145.774 kb on - strand, within CCNA_00136at 145.774 kb on - strand, within CCNA_00136at 145.775 kb on + strand, within CCNA_00136at 145.842 kb on - strand, within CCNA_00136at 145.869 kb on + strand, within CCNA_00136at 145.877 kb on - strand, within CCNA_00136at 145.958 kb on - strand, within CCNA_00136at 145.958 kb on - strand, within CCNA_00136at 146.025 kb on - strand, within CCNA_00136at 146.033 kb on - strand, within CCNA_00136at 146.132 kb on + strand, within CCNA_00136at 146.151 kb on - strand, within CCNA_00136at 146.156 kb on - strand, within CCNA_00136at 146.158 kb on - strand, within CCNA_00136at 146.173 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.196 kb on + strand, within CCNA_00136at 146.204 kb on - strand, within CCNA_00136at 146.204 kb on - strand, within CCNA_00136at 146.204 kb on - strand, within CCNA_00136at 146.206 kb on - strand, within CCNA_00136at 146.267 kb on + strand, within CCNA_00136at 146.350 kb on + strand, within CCNA_00136at 146.378 kb on + strand, within CCNA_00136at 146.378 kb on + strand, within CCNA_00136at 146.383 kb on + strand, within CCNA_00136at 146.386 kb on - strand, within CCNA_00136at 146.401 kb on - strand, within CCNA_00136at 146.408 kb on + strand, within CCNA_00136at 146.463 kb on + strand, within CCNA_00136at 146.464 kb on - strand, within CCNA_00136at 146.490 kb on - strand, within CCNA_00136at 146.493 kb on - strand, within CCNA_00136at 146.495 kb on - strand, within CCNA_00136at 146.618 kb on + strand, within CCNA_00136at 146.619 kb on + strand, within CCNA_00136at 146.626 kb on - strand, within CCNA_00136at 146.691 kb on + strand, within CCNA_00136at 146.721 kb on - strand, within CCNA_00136at 146.811 kb on + strandat 146.857 kb on + strandat 146.866 kb on - strandat 146.871 kb on + strandat 146.879 kb on - strandat 146.908 kb on + strandat 146.908 kb on - strandat 146.910 kb on + strandat 146.910 kb on + strandat 147.060 kb on - strandat 147.067 kb on + strandat 147.080 kb on - strandat 147.136 kb on - strandat 147.157 kb on + strand, within CCNA_00137at 147.256 kb on - strand, within CCNA_00137at 147.262 kb on - strand, within CCNA_00137at 147.403 kb on - strand, within CCNA_00137at 147.408 kb on - strand, within CCNA_00137at 147.434 kb on + strand, within CCNA_00137at 147.442 kb on - strand, within CCNA_00137at 147.564 kb on + strand, within CCNA_00137at 147.564 kb on + strand, within CCNA_00137at 147.572 kb on - strand, within CCNA_00137at 147.572 kb on - strand, within CCNA_00137at 147.572 kb on - strand, within CCNA_00137at 147.572 kb on - strand, within CCNA_00137at 147.572 kb on - strand, within CCNA_00137at 147.577 kb on - strand, within CCNA_00137at 147.590 kb on - strand, within CCNA_00137at 147.627 kb on - strand, within CCNA_00137at 147.673 kb on + strand, within CCNA_00137at 147.681 kb on - strand, within CCNA_00137at 147.805 kb on + strand, within CCNA_00137at 147.842 kb on + strand, within CCNA_00137at 147.842 kb on + strand, within CCNA_00137at 147.850 kb on - strand, within CCNA_00137at 147.850 kb on - strand, within CCNA_00137at 147.922 kb on + strand, within CCNA_00137at 147.922 kb on + strand, within CCNA_00137at 147.928 kb on + strand, within CCNA_00137at 147.928 kb on + strand, within CCNA_00137at 147.928 kb on + strand, within CCNA_00137at 147.936 kb on - strand, within CCNA_00137at 147.936 kb on - strand, within CCNA_00137at 147.936 kb on - strand, within CCNA_00137at 147.936 kb on - strand, within CCNA_00137at 147.936 kb on - strand, within CCNA_00137at 147.941 kb on - strand, within CCNA_00137at 147.941 kb on - strand, within CCNA_00137

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Phosphomycin 0.005 mg/ml
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144,306 + CCNA_00134 0.74 -0.2
144,306 + CCNA_00134 0.74 -0.8
144,306 + CCNA_00134 0.74 -0.9
144,306 + CCNA_00134 0.74 -0.3
144,306 + CCNA_00134 0.74 -1.3
144,306 + CCNA_00134 0.74 -0.2
144,314 - CCNA_00134 0.76 +0.7
144,314 - CCNA_00134 0.76 +0.8
144,368 + CCNA_00134 0.88 -1.6
144,390 + +0.5
144,393 - -0.8
144,406 + -0.2
144,428 + -1.3
144,436 - -0.0
144,445 + -0.9
144,468 + -0.3
144,470 - -1.0
144,472 + +0.1
144,472 + +0.4
144,472 + -0.5
144,472 + +1.0
144,480 - +1.1
144,480 - +0.4
144,480 - -1.0
144,487 + -1.8
144,507 - -0.5
144,771 - CCNA_00135 0.39 -0.2
144,771 - CCNA_00135 0.39 +0.7
144,771 - CCNA_00135 0.39 -1.0
144,794 + CCNA_00135 0.42 -0.1
144,811 - CCNA_00135 0.44 +0.2
144,850 + CCNA_00135 0.49 +1.1
144,872 + CCNA_00135 0.51 -0.5
144,880 - CCNA_00135 0.52 -2.8
144,961 + CCNA_00135 0.62 -3.5
144,971 + CCNA_00135 0.63 -1.2
144,971 + CCNA_00135 0.63 -0.8
144,971 + CCNA_00135 0.63 -0.5
144,979 - CCNA_00135 0.64 -1.7
144,979 - CCNA_00135 0.64 +1.1
144,986 + CCNA_00135 0.65 -1.2
145,004 + CCNA_00135 0.67 -1.3
145,079 - CCNA_00135 0.76 +0.1
145,108 + CCNA_00135 0.80 -0.9
145,116 - CCNA_00135 0.81 +0.1
145,127 + CCNA_00135 0.82 -0.2
145,129 + CCNA_00135 0.82 -1.2
145,129 + CCNA_00135 0.82 +0.8
145,137 - CCNA_00135 0.83 -2.0
145,289 + +0.9
145,297 - +1.2
145,342 + -1.6
145,342 + -1.8
145,342 + -3.3
145,345 - -1.6
145,350 - -3.6
145,378 - -3.7
145,386 + +0.2
145,407 + -0.6
145,457 + CCNA_00136 0.11 -2.2
145,457 + CCNA_00136 0.11 +0.2
145,457 + CCNA_00136 0.11 -2.0
145,457 + CCNA_00136 0.11 -2.0
145,465 - CCNA_00136 0.11 -1.4
145,465 - CCNA_00136 0.11 -1.2
145,465 - CCNA_00136 0.11 -2.6
145,516 - CCNA_00136 0.14 +0.4
145,525 + CCNA_00136 0.15 +0.7
145,532 + CCNA_00136 0.15 +2.3
145,552 + CCNA_00136 0.17 -1.2
145,561 - CCNA_00136 0.17 -1.6
145,564 + CCNA_00136 0.17 +2.1
145,570 - CCNA_00136 0.18 -2.4
145,570 - CCNA_00136 0.18 -2.7
145,570 - CCNA_00136 0.18 -0.1
145,570 - CCNA_00136 0.18 -1.5
145,570 - CCNA_00136 0.18 -3.2
145,587 - CCNA_00136 0.19 -3.5
145,594 - CCNA_00136 0.19 -4.2
145,594 - CCNA_00136 0.19 -1.0
145,603 + CCNA_00136 0.20 -0.5
145,603 + CCNA_00136 0.20 -1.9
145,603 + CCNA_00136 0.20 +0.4
145,616 - CCNA_00136 0.20 -1.2
145,632 - CCNA_00136 0.21 -1.5
145,632 - CCNA_00136 0.21 -1.9
145,632 - CCNA_00136 0.21 -2.6
145,632 - CCNA_00136 0.21 -2.2
145,646 - CCNA_00136 0.22 +0.1
145,655 + CCNA_00136 0.23 -1.6
145,703 + CCNA_00136 0.26 +0.2
145,774 - CCNA_00136 0.30 -0.2
145,774 - CCNA_00136 0.30 -1.0
145,774 - CCNA_00136 0.30 -2.3
145,775 + CCNA_00136 0.30 -2.3
145,842 - CCNA_00136 0.34 +0.2
145,869 + CCNA_00136 0.35 -0.8
145,877 - CCNA_00136 0.36 -0.3
145,958 - CCNA_00136 0.41 +1.4
145,958 - CCNA_00136 0.41 +0.2
146,025 - CCNA_00136 0.45 -1.7
146,033 - CCNA_00136 0.45 -1.2
146,132 + CCNA_00136 0.51 +0.7
146,151 - CCNA_00136 0.52 +0.4
146,156 - CCNA_00136 0.53 -2.2
146,158 - CCNA_00136 0.53 -2.4
146,173 + CCNA_00136 0.54 +0.4
146,196 + CCNA_00136 0.55 -0.3
146,196 + CCNA_00136 0.55 +0.5
146,196 + CCNA_00136 0.55 +0.5
146,196 + CCNA_00136 0.55 -0.6
146,196 + CCNA_00136 0.55 -0.5
146,204 - CCNA_00136 0.55 -0.9
146,204 - CCNA_00136 0.55 -2.6
146,204 - CCNA_00136 0.55 -2.3
146,206 - CCNA_00136 0.56 -1.5
146,267 + CCNA_00136 0.59 -2.4
146,350 + CCNA_00136 0.64 +0.7
146,378 + CCNA_00136 0.66 -0.6
146,378 + CCNA_00136 0.66 -2.0
146,383 + CCNA_00136 0.66 -2.7
146,386 - CCNA_00136 0.66 -2.8
146,401 - CCNA_00136 0.67 -3.4
146,408 + CCNA_00136 0.68 -0.1
146,463 + CCNA_00136 0.71 +0.5
146,464 - CCNA_00136 0.71 -2.1
146,490 - CCNA_00136 0.72 -2.0
146,493 - CCNA_00136 0.73 -2.4
146,495 - CCNA_00136 0.73 -1.4
146,618 + CCNA_00136 0.80 +0.2
146,619 + CCNA_00136 0.80 +0.7
146,626 - CCNA_00136 0.81 -4.1
146,691 + CCNA_00136 0.84 -1.4
146,721 - CCNA_00136 0.86 -2.1
146,811 + -1.1
146,857 + -0.1
146,866 - -3.2
146,871 + -2.6
146,879 - -1.3
146,908 + -0.0
146,908 - -3.1
146,910 + -1.9
146,910 + +0.7
147,060 - +0.3
147,067 + +0.5
147,080 - -1.1
147,136 - -0.6
147,157 + CCNA_00137 0.11 -2.0
147,256 - CCNA_00137 0.17 -0.3
147,262 - CCNA_00137 0.18 +0.8
147,403 - CCNA_00137 0.27 +0.7
147,408 - CCNA_00137 0.27 -1.2
147,434 + CCNA_00137 0.29 +0.6
147,442 - CCNA_00137 0.30 -0.5
147,564 + CCNA_00137 0.37 -0.8
147,564 + CCNA_00137 0.37 -1.4
147,572 - CCNA_00137 0.38 -1.5
147,572 - CCNA_00137 0.38 -0.3
147,572 - CCNA_00137 0.38 -1.2
147,572 - CCNA_00137 0.38 +0.2
147,572 - CCNA_00137 0.38 -0.9
147,577 - CCNA_00137 0.38 +0.2
147,590 - CCNA_00137 0.39 -0.4
147,627 - CCNA_00137 0.41 +0.4
147,673 + CCNA_00137 0.44 +0.5
147,681 - CCNA_00137 0.45 +1.7
147,805 + CCNA_00137 0.53 +1.9
147,842 + CCNA_00137 0.55 -2.6
147,842 + CCNA_00137 0.55 +0.4
147,850 - CCNA_00137 0.56 +2.1
147,850 - CCNA_00137 0.56 +1.1
147,922 + CCNA_00137 0.61 -1.0
147,922 + CCNA_00137 0.61 -0.5
147,928 + CCNA_00137 0.61 -2.0
147,928 + CCNA_00137 0.61 -1.3
147,928 + CCNA_00137 0.61 -0.5
147,936 - CCNA_00137 0.61 -1.2
147,936 - CCNA_00137 0.61 -0.5
147,936 - CCNA_00137 0.61 -3.0
147,936 - CCNA_00137 0.61 -0.8
147,936 - CCNA_00137 0.61 -1.2
147,941 - CCNA_00137 0.62 +0.1
147,941 - CCNA_00137 0.62 -1.4

Or see this region's nucleotide sequence