Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_928

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_926 and Ac3H11_927 are separated by 16 nucleotidesAc3H11_927 and Ac3H11_928 are separated by 82 nucleotidesAc3H11_928 and Ac3H11_929 are separated by 90 nucleotides Ac3H11_926 - Phytoene desaturase, pro-zeta-carotene producing (EC 1.-.-.-), at 39,885 to 41,201 _926 Ac3H11_927 - Phytoene synthase (EC 2.5.1.32), at 41,218 to 42,087 _927 Ac3H11_928 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 42,170 to 43,093 _928 Ac3H11_929 - L-serine ammonia-lyase (EC 4.3.1.17) (from data), at 43,184 to 44,584 _929 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1at 41.219 kb on + strandat 42.041 kb on - strandat 42.045 kb on - strandat 42.045 kb on - strandat 42.326 kb on + strand, within Ac3H11_928at 42.326 kb on + strand, within Ac3H11_928at 42.372 kb on + strand, within Ac3H11_928at 42.373 kb on - strand, within Ac3H11_928at 42.373 kb on - strand, within Ac3H11_928at 42.373 kb on - strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.534 kb on + strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.535 kb on - strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.552 kb on + strand, within Ac3H11_928at 42.553 kb on - strand, within Ac3H11_928at 42.553 kb on - strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.758 kb on + strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.759 kb on - strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.803 kb on + strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.804 kb on - strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.807 kb on + strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.808 kb on - strand, within Ac3H11_928at 42.856 kb on - strand, within Ac3H11_928at 42.856 kb on - strand, within Ac3H11_928at 42.871 kb on + strand, within Ac3H11_928at 42.872 kb on - strand, within Ac3H11_928at 42.872 kb on - strand, within Ac3H11_928at 42.872 kb on - strand, within Ac3H11_928at 42.882 kb on + strand, within Ac3H11_928at 42.882 kb on + strand, within Ac3H11_928at 42.883 kb on - strand, within Ac3H11_928at 42.915 kb on + strand, within Ac3H11_928at 42.915 kb on + strand, within Ac3H11_928at 42.916 kb on - strand, within Ac3H11_928at 42.916 kb on - strand, within Ac3H11_928at 43.034 kb on + strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.034 kb on + strandat 43.066 kb on + strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.067 kb on - strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.233 kb on + strandat 43.234 kb on - strandat 43.234 kb on - strandat 43.234 kb on - strandat 43.234 kb on - strandat 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.572 kb on + strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.573 kb on - strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.650 kb on + strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.651 kb on - strand, within Ac3H11_929at 43.653 kb on + strand, within Ac3H11_929at 43.653 kb on + strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.654 kb on - strand, within Ac3H11_929at 43.749 kb on + strand, within Ac3H11_929at 43.750 kb on - strand, within Ac3H11_929

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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41,219 + -0.5
42,041 - -1.7
42,045 - +0.5
42,045 - -0.5
42,326 + Ac3H11_928 0.17 +0.3
42,326 + Ac3H11_928 0.17 -0.4
42,372 + Ac3H11_928 0.22 -0.7
42,373 - Ac3H11_928 0.22 +1.1
42,373 - Ac3H11_928 0.22 -0.9
42,373 - Ac3H11_928 0.22 +0.0
42,534 + Ac3H11_928 0.39 -0.0
42,534 + Ac3H11_928 0.39 -0.5
42,534 + Ac3H11_928 0.39 -1.2
42,534 + Ac3H11_928 0.39 +0.6
42,534 + Ac3H11_928 0.39 +1.2
42,535 - Ac3H11_928 0.40 +0.2
42,535 - Ac3H11_928 0.40 +0.6
42,535 - Ac3H11_928 0.40 +1.6
42,535 - Ac3H11_928 0.40 +0.6
42,552 + Ac3H11_928 0.41 -1.2
42,552 + Ac3H11_928 0.41 +1.3
42,552 + Ac3H11_928 0.41 +0.8
42,552 + Ac3H11_928 0.41 -0.4
42,553 - Ac3H11_928 0.41 -0.4
42,553 - Ac3H11_928 0.41 +0.1
42,758 + Ac3H11_928 0.64 -0.7
42,758 + Ac3H11_928 0.64 -1.4
42,758 + Ac3H11_928 0.64 +0.4
42,758 + Ac3H11_928 0.64 +1.4
42,759 - Ac3H11_928 0.64 +0.1
42,759 - Ac3H11_928 0.64 +0.6
42,759 - Ac3H11_928 0.64 +0.2
42,759 - Ac3H11_928 0.64 +0.2
42,759 - Ac3H11_928 0.64 -1.8
42,803 + Ac3H11_928 0.69 -0.4
42,803 + Ac3H11_928 0.69 +0.3
42,803 + Ac3H11_928 0.69 +1.1
42,803 + Ac3H11_928 0.69 -1.3
42,803 + Ac3H11_928 0.69 +0.4
42,803 + Ac3H11_928 0.69 -0.2
42,803 + Ac3H11_928 0.69 +1.0
42,803 + Ac3H11_928 0.69 +0.4
42,803 + Ac3H11_928 0.69 -1.4
42,804 - Ac3H11_928 0.69 +0.8
42,804 - Ac3H11_928 0.69 +0.5
42,804 - Ac3H11_928 0.69 -2.7
42,804 - Ac3H11_928 0.69 +0.1
42,807 + Ac3H11_928 0.69 +0.8
42,807 + Ac3H11_928 0.69 +0.6
42,807 + Ac3H11_928 0.69 +1.3
42,807 + Ac3H11_928 0.69 -0.1
42,807 + Ac3H11_928 0.69 +0.5
42,807 + Ac3H11_928 0.69 +0.5
42,807 + Ac3H11_928 0.69 -0.2
42,807 + Ac3H11_928 0.69 +1.0
42,808 - Ac3H11_928 0.69 +1.0
42,808 - Ac3H11_928 0.69 -0.5
42,808 - Ac3H11_928 0.69 +0.8
42,808 - Ac3H11_928 0.69 +0.4
42,808 - Ac3H11_928 0.69 +0.0
42,808 - Ac3H11_928 0.69 -0.4
42,808 - Ac3H11_928 0.69 -0.0
42,808 - Ac3H11_928 0.69 -1.1
42,856 - Ac3H11_928 0.74 +0.7
42,856 - Ac3H11_928 0.74 +1.1
42,871 + Ac3H11_928 0.76 -0.6
42,872 - Ac3H11_928 0.76 +0.1
42,872 - Ac3H11_928 0.76 +0.5
42,872 - Ac3H11_928 0.76 +0.4
42,882 + Ac3H11_928 0.77 +0.0
42,882 + Ac3H11_928 0.77 +0.1
42,883 - Ac3H11_928 0.77 -0.1
42,915 + Ac3H11_928 0.81 +0.3
42,915 + Ac3H11_928 0.81 +0.1
42,916 - Ac3H11_928 0.81 +0.5
42,916 - Ac3H11_928 0.81 -0.6
43,034 + +1.4
43,034 + +0.6
43,034 + -1.2
43,034 + -1.0
43,034 + +0.0
43,066 + +0.6
43,067 - -0.7
43,067 - -1.9
43,067 - +0.5
43,067 - +1.1
43,067 - +0.6
43,067 - -0.0
43,067 - -0.7
43,233 + +0.4
43,233 + -0.2
43,233 + -0.7
43,233 + +1.6
43,233 + -0.1
43,233 + -3.7
43,234 - -0.2
43,234 - -0.2
43,234 - -2.7
43,234 - -0.2
43,572 + Ac3H11_929 0.28 +0.4
43,572 + Ac3H11_929 0.28 +0.4
43,572 + Ac3H11_929 0.28 -0.1
43,572 + Ac3H11_929 0.28 -0.4
43,572 + Ac3H11_929 0.28 +0.9
43,573 - Ac3H11_929 0.28 +0.5
43,573 - Ac3H11_929 0.28 -0.2
43,573 - Ac3H11_929 0.28 -1.3
43,573 - Ac3H11_929 0.28 +0.7
43,650 + Ac3H11_929 0.33 -1.1
43,650 + Ac3H11_929 0.33 +0.4
43,650 + Ac3H11_929 0.33 -0.6
43,650 + Ac3H11_929 0.33 -2.0
43,650 + Ac3H11_929 0.33 +0.4
43,650 + Ac3H11_929 0.33 -0.6
43,650 + Ac3H11_929 0.33 +1.0
43,651 - Ac3H11_929 0.33 -0.5
43,651 - Ac3H11_929 0.33 -1.4
43,651 - Ac3H11_929 0.33 -0.7
43,651 - Ac3H11_929 0.33 -0.4
43,653 + Ac3H11_929 0.33 -1.2
43,653 + Ac3H11_929 0.33 -2.4
43,654 - Ac3H11_929 0.34 +0.1
43,654 - Ac3H11_929 0.34 +1.0
43,654 - Ac3H11_929 0.34 -0.7
43,654 - Ac3H11_929 0.34 +0.2
43,654 - Ac3H11_929 0.34 -0.4
43,749 + Ac3H11_929 0.40 -3.3
43,750 - Ac3H11_929 0.40 +0.3

Or see this region's nucleotide sequence