Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_381 and Ac3H11_566 are separated by 178 nucleotides Ac3H11_566 and Ac3H11_382 are separated by 194 nucleotides Ac3H11_382 and Ac3H11_383 are separated by 305 nucleotides
Ac3H11_381 - Integrase, at 57,558 to 58,805
_381
Ac3H11_566 - tRNA-Arg-TCT, at 58,984 to 59,057
_566
Ac3H11_382 - TrkA-N:Sodium/hydrogen exchanger, at 59,252 to 60,991
_382
Ac3H11_383 - FIG01198699: hypothetical protein, at 61,297 to 63,186
_383
Position (kb) 59
60
61 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 58.336 kb on - strand, within Ac3H11_381 at 58.336 kb on - strand, within Ac3H11_381 at 58.336 kb on - strand, within Ac3H11_381 at 58.399 kb on + strand, within Ac3H11_381 at 58.400 kb on - strand, within Ac3H11_381 at 58.429 kb on - strand, within Ac3H11_381 at 58.429 kb on - strand, within Ac3H11_381 at 58.444 kb on + strand, within Ac3H11_381 at 58.445 kb on - strand, within Ac3H11_381 at 58.518 kb on + strand, within Ac3H11_381 at 58.518 kb on + strand, within Ac3H11_381 at 58.519 kb on - strand, within Ac3H11_381 at 58.519 kb on - strand, within Ac3H11_381 at 58.563 kb on + strand, within Ac3H11_381 at 58.563 kb on + strand, within Ac3H11_381 at 58.563 kb on + strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.564 kb on - strand, within Ac3H11_381 at 58.633 kb on + strand, within Ac3H11_381 at 58.675 kb on + strand, within Ac3H11_381 at 58.675 kb on + strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.676 kb on - strand, within Ac3H11_381 at 58.690 kb on + strand at 58.690 kb on + strand at 58.690 kb on + strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.718 kb on - strand at 58.718 kb on - strand at 58.782 kb on + strand at 58.782 kb on + strand at 58.796 kb on + strand at 58.823 kb on + strand at 58.877 kb on + strand at 58.877 kb on + strand at 58.877 kb on + strand at 58.878 kb on - strand at 58.933 kb on - strand at 58.977 kb on + strand at 58.977 kb on + strand at 58.978 kb on - strand at 59.081 kb on - strand at 59.197 kb on - strand at 59.198 kb on + strand at 59.198 kb on + strand at 59.198 kb on + strand at 59.198 kb on + strand at 59.199 kb on - strand at 59.199 kb on - strand at 59.357 kb on + strand at 59.560 kb on + strand, within Ac3H11_382 at 59.560 kb on + strand, within Ac3H11_382 at 59.561 kb on - strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.684 kb on + strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 59.685 kb on - strand, within Ac3H11_382 at 60.367 kb on - strand, within Ac3H11_382 at 60.554 kb on + strand, within Ac3H11_382 at 60.555 kb on - strand, within Ac3H11_382 at 60.564 kb on + strand, within Ac3H11_382 at 60.576 kb on + strand, within Ac3H11_382 at 60.576 kb on + strand at 60.576 kb on + strand, within Ac3H11_382 at 60.576 kb on + strand, within Ac3H11_382 at 60.576 kb on + strand, within Ac3H11_382 at 60.577 kb on - strand, within Ac3H11_382 at 60.687 kb on + strand, within Ac3H11_382 at 60.688 kb on - strand, within Ac3H11_382 at 60.868 kb on + strand at 60.868 kb on + strand at 60.869 kb on - strand at 60.869 kb on - strand at 60.869 kb on - strand at 60.869 kb on - strand at 60.879 kb on + strand at 60.879 kb on + strand at 60.879 kb on + strand at 60.880 kb on - strand at 60.880 kb on - strand at 60.880 kb on - strand at 61.298 kb on + strand at 61.298 kb on + strand at 61.299 kb on - strand at 61.299 kb on - strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.382 kb on + strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.383 kb on - strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.451 kb on + strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.452 kb on - strand at 61.581 kb on - strand, within Ac3H11_383
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 58,336 - Ac3H11_381 0.62 +0.7 58,336 - Ac3H11_381 0.62 +1.0 58,336 - Ac3H11_381 0.62 +0.6 58,399 + Ac3H11_381 0.67 +1.3 58,400 - Ac3H11_381 0.67 +0.1 58,429 - Ac3H11_381 0.70 +2.2 58,429 - Ac3H11_381 0.70 +0.4 58,444 + Ac3H11_381 0.71 -0.4 58,445 - Ac3H11_381 0.71 -1.0 58,518 + Ac3H11_381 0.77 +0.9 58,518 + Ac3H11_381 0.77 +0.8 58,519 - Ac3H11_381 0.77 -2.1 58,519 - Ac3H11_381 0.77 +0.7 58,563 + Ac3H11_381 0.81 -0.3 58,563 + Ac3H11_381 0.81 -0.4 58,563 + Ac3H11_381 0.81 +0.3 58,564 - Ac3H11_381 0.81 +0.6 58,564 - Ac3H11_381 0.81 -1.1 58,564 - Ac3H11_381 0.81 +0.6 58,564 - Ac3H11_381 0.81 -0.2 58,564 - Ac3H11_381 0.81 -0.4 58,564 - Ac3H11_381 0.81 +0.9 58,564 - Ac3H11_381 0.81 +0.4 58,564 - Ac3H11_381 0.81 -1.2 58,633 + Ac3H11_381 0.86 +0.5 58,675 + Ac3H11_381 0.90 +0.5 58,675 + Ac3H11_381 0.90 +0.9 58,676 - Ac3H11_381 0.90 +0.6 58,676 - Ac3H11_381 0.90 +1.0 58,676 - Ac3H11_381 0.90 +0.4 58,676 - Ac3H11_381 0.90 +1.2 58,690 + -0.1 58,690 + +1.0 58,690 + +0.5 58,691 - -1.1 58,691 - +0.0 58,691 - +0.7 58,691 - +0.0 58,691 - +1.6 58,691 - -1.0 58,691 - -0.0 58,718 - -0.2 58,718 - +0.3 58,782 + -2.4 58,782 + -0.8 58,796 + -0.4 58,823 + -0.2 58,877 + -1.1 58,877 + +0.2 58,877 + +1.5 58,878 - -1.2 58,933 - -1.7 58,977 + -1.8 58,977 + +0.2 58,978 - -0.4 59,081 - -0.4 59,197 - +2.4 59,198 + -0.9 59,198 + -4.2 59,198 + +0.6 59,198 + -0.1 59,199 - +0.6 59,199 - -2.7 59,357 + +0.7 59,560 + Ac3H11_382 0.18 +0.4 59,560 + Ac3H11_382 0.18 -1.3 59,561 - Ac3H11_382 0.18 +0.5 59,684 + Ac3H11_382 0.25 -0.0 59,684 + Ac3H11_382 0.25 +0.4 59,684 + Ac3H11_382 0.25 +0.7 59,684 + Ac3H11_382 0.25 -0.5 59,684 + Ac3H11_382 0.25 -1.4 59,684 + Ac3H11_382 0.25 +0.0 59,684 + Ac3H11_382 0.25 +0.1 59,685 - Ac3H11_382 0.25 -0.4 59,685 - Ac3H11_382 0.25 -1.2 59,685 - Ac3H11_382 0.25 +0.1 59,685 - Ac3H11_382 0.25 +0.7 59,685 - Ac3H11_382 0.25 -0.1 59,685 - Ac3H11_382 0.25 +0.3 59,685 - Ac3H11_382 0.25 +0.5 60,367 - Ac3H11_382 0.64 +0.7 60,554 + Ac3H11_382 0.75 +0.4 60,555 - Ac3H11_382 0.75 +0.6 60,564 + Ac3H11_382 0.75 +0.3 60,576 + Ac3H11_382 0.76 +0.5 60,576 + +0.0 60,576 + Ac3H11_382 0.76 -0.5 60,576 + Ac3H11_382 0.76 +0.4 60,576 + Ac3H11_382 0.76 +0.8 60,577 - Ac3H11_382 0.76 +1.9 60,687 + Ac3H11_382 0.82 -0.2 60,688 - Ac3H11_382 0.83 -0.1 60,868 + -0.2 60,868 + -0.4 60,869 - -1.0 60,869 - -0.1 60,869 - +0.9 60,869 - +0.6 60,879 + -0.4 60,879 + -0.3 60,879 + -0.5 60,880 - -0.6 60,880 - +0.1 60,880 - -0.5 61,298 + -0.1 61,298 + -1.1 61,299 - +0.6 61,299 - -0.5 61,382 + -0.6 61,382 + -0.5 61,382 + +0.0 61,382 + -0.5 61,382 + +1.2 61,382 + -1.1 61,382 + -0.3 61,382 + +0.9 61,382 + +0.6 61,382 + -0.1 61,383 - -0.4 61,383 - -0.1 61,383 - +0.8 61,383 - +0.9 61,383 - +0.2 61,451 + -1.0 61,451 + +0.4 61,451 + +1.4 61,451 + +1.2 61,451 + +2.4 61,451 + -0.1 61,451 + -0.9 61,451 + -0.1 61,451 + -0.0 61,451 + +0.7 61,451 + -1.3 61,451 + +0.3 61,451 + -1.4 61,452 - +1.0 61,452 - -0.0 61,452 - +0.4 61,452 - -1.4 61,452 - +1.3 61,452 - +0.9 61,452 - +0.1 61,452 - +0.9 61,452 - +0.4 61,452 - +0.3 61,452 - -0.1 61,452 - -0.5 61,452 - -1.0 61,452 - +1.2 61,581 - Ac3H11_383 0.15 +0.4
Or see this region's nucleotide sequence