Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3817

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3816 and Ac3H11_3817 are separated by 3 nucleotidesAc3H11_3817 and Ac3H11_3818 are separated by 174 nucleotides Ac3H11_3816 - Patatin, at 31,030 to 32,322 _3816 Ac3H11_3817 - strictosidine synthase family protein, at 32,326 to 33,444 _3817 Ac3H11_3818 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 33,619 to 35,709 _3818 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1 2at 31.330 kb on + strand, within Ac3H11_3816at 31.331 kb on - strand, within Ac3H11_3816at 31.331 kb on - strand, within Ac3H11_3816at 31.549 kb on + strand, within Ac3H11_3816at 31.550 kb on - strand, within Ac3H11_3816at 31.550 kb on - strand, within Ac3H11_3816at 31.550 kb on - strand, within Ac3H11_3816at 31.861 kb on + strand, within Ac3H11_3816at 31.861 kb on + strand, within Ac3H11_3816at 32.158 kb on + strand, within Ac3H11_3816at 32.179 kb on + strand, within Ac3H11_3816at 32.181 kb on + strand, within Ac3H11_3816at 32.181 kb on + strand, within Ac3H11_3816at 32.181 kb on + strand, within Ac3H11_3816at 32.182 kb on - strand, within Ac3H11_3816at 32.182 kb on - strand, within Ac3H11_3816at 32.182 kb on - strand, within Ac3H11_3816at 32.378 kb on + strandat 32.378 kb on + strandat 32.378 kb on + strandat 32.378 kb on + strandat 32.378 kb on + strandat 32.379 kb on - strandat 32.379 kb on - strandat 32.379 kb on - strandat 32.421 kb on - strandat 32.736 kb on - strand, within Ac3H11_3817at 32.736 kb on - strand, within Ac3H11_3817at 32.846 kb on + strand, within Ac3H11_3817at 32.847 kb on - strand, within Ac3H11_3817at 32.907 kb on + strand, within Ac3H11_3817at 32.954 kb on + strand, within Ac3H11_3817at 32.955 kb on - strand, within Ac3H11_3817at 32.955 kb on - strand, within Ac3H11_3817at 33.207 kb on - strand, within Ac3H11_3817at 33.207 kb on - strand, within Ac3H11_3817at 33.207 kb on - strand, within Ac3H11_3817at 33.378 kb on - strandat 33.427 kb on + strandat 33.427 kb on + strandat 33.428 kb on - strandat 33.428 kb on - strandat 33.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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31,330 + Ac3H11_3816 0.23 +0.5
31,331 - Ac3H11_3816 0.23 -0.2
31,331 - Ac3H11_3816 0.23 +0.5
31,549 + Ac3H11_3816 0.40 +2.7
31,550 - Ac3H11_3816 0.40 +0.7
31,550 - Ac3H11_3816 0.40 +0.8
31,550 - Ac3H11_3816 0.40 -1.1
31,861 + Ac3H11_3816 0.64 -0.2
31,861 + Ac3H11_3816 0.64 -0.1
32,158 + Ac3H11_3816 0.87 +1.2
32,179 + Ac3H11_3816 0.89 -0.8
32,181 + Ac3H11_3816 0.89 +0.2
32,181 + Ac3H11_3816 0.89 +0.4
32,181 + Ac3H11_3816 0.89 +0.7
32,182 - Ac3H11_3816 0.89 +0.2
32,182 - Ac3H11_3816 0.89 +0.4
32,182 - Ac3H11_3816 0.89 -0.2
32,378 + -0.0
32,378 + -0.8
32,378 + -0.7
32,378 + +0.4
32,378 + -1.4
32,379 - -1.9
32,379 - +0.5
32,379 - -0.5
32,421 - -0.3
32,736 - Ac3H11_3817 0.37 -0.0
32,736 - Ac3H11_3817 0.37 -0.8
32,846 + Ac3H11_3817 0.46 +0.1
32,847 - Ac3H11_3817 0.47 -0.1
32,907 + Ac3H11_3817 0.52 -0.5
32,954 + Ac3H11_3817 0.56 +0.1
32,955 - Ac3H11_3817 0.56 +1.1
32,955 - Ac3H11_3817 0.56 -1.1
33,207 - Ac3H11_3817 0.79 -0.6
33,207 - Ac3H11_3817 0.79 -1.2
33,207 - Ac3H11_3817 0.79 -1.8
33,378 - -0.3
33,427 + -1.4
33,427 + -1.0
33,428 - +0.0
33,428 - +0.2
33,428 - -1.7

Or see this region's nucleotide sequence