Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3816 and Ac3H11_3817 are separated by 3 nucleotides Ac3H11_3817 and Ac3H11_3818 are separated by 174 nucleotides
Ac3H11_3816 - Patatin, at 31,030 to 32,322
_3816
Ac3H11_3817 - strictosidine synthase family protein, at 32,326 to 33,444
_3817
Ac3H11_3818 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 33,619 to 35,709
_3818
Position (kb)
32
33
34 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 31.330 kb on + strand, within Ac3H11_3816 at 31.331 kb on - strand, within Ac3H11_3816 at 31.331 kb on - strand, within Ac3H11_3816 at 31.549 kb on + strand, within Ac3H11_3816 at 31.550 kb on - strand, within Ac3H11_3816 at 31.550 kb on - strand, within Ac3H11_3816 at 31.550 kb on - strand, within Ac3H11_3816 at 31.861 kb on + strand, within Ac3H11_3816 at 31.861 kb on + strand, within Ac3H11_3816 at 32.158 kb on + strand, within Ac3H11_3816 at 32.179 kb on + strand, within Ac3H11_3816 at 32.181 kb on + strand, within Ac3H11_3816 at 32.181 kb on + strand, within Ac3H11_3816 at 32.181 kb on + strand, within Ac3H11_3816 at 32.182 kb on - strand, within Ac3H11_3816 at 32.182 kb on - strand, within Ac3H11_3816 at 32.182 kb on - strand, within Ac3H11_3816 at 32.378 kb on + strand at 32.378 kb on + strand at 32.378 kb on + strand at 32.378 kb on + strand at 32.378 kb on + strand at 32.379 kb on - strand at 32.379 kb on - strand at 32.379 kb on - strand at 32.421 kb on - strand at 32.736 kb on - strand, within Ac3H11_3817 at 32.736 kb on - strand, within Ac3H11_3817 at 32.846 kb on + strand, within Ac3H11_3817 at 32.847 kb on - strand, within Ac3H11_3817 at 32.907 kb on + strand, within Ac3H11_3817 at 32.954 kb on + strand, within Ac3H11_3817 at 32.955 kb on - strand, within Ac3H11_3817 at 32.955 kb on - strand, within Ac3H11_3817 at 33.207 kb on - strand, within Ac3H11_3817 at 33.207 kb on - strand, within Ac3H11_3817 at 33.207 kb on - strand, within Ac3H11_3817 at 33.378 kb on - strand at 33.427 kb on + strand at 33.427 kb on + strand at 33.428 kb on - strand at 33.428 kb on - strand at 33.428 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 31,330 + Ac3H11_3816 0.23 +0.5 31,331 - Ac3H11_3816 0.23 -0.2 31,331 - Ac3H11_3816 0.23 +0.5 31,549 + Ac3H11_3816 0.40 +2.7 31,550 - Ac3H11_3816 0.40 +0.7 31,550 - Ac3H11_3816 0.40 +0.8 31,550 - Ac3H11_3816 0.40 -1.1 31,861 + Ac3H11_3816 0.64 -0.2 31,861 + Ac3H11_3816 0.64 -0.1 32,158 + Ac3H11_3816 0.87 +1.2 32,179 + Ac3H11_3816 0.89 -0.8 32,181 + Ac3H11_3816 0.89 +0.2 32,181 + Ac3H11_3816 0.89 +0.4 32,181 + Ac3H11_3816 0.89 +0.7 32,182 - Ac3H11_3816 0.89 +0.2 32,182 - Ac3H11_3816 0.89 +0.4 32,182 - Ac3H11_3816 0.89 -0.2 32,378 + -0.0 32,378 + -0.8 32,378 + -0.7 32,378 + +0.4 32,378 + -1.4 32,379 - -1.9 32,379 - +0.5 32,379 - -0.5 32,421 - -0.3 32,736 - Ac3H11_3817 0.37 -0.0 32,736 - Ac3H11_3817 0.37 -0.8 32,846 + Ac3H11_3817 0.46 +0.1 32,847 - Ac3H11_3817 0.47 -0.1 32,907 + Ac3H11_3817 0.52 -0.5 32,954 + Ac3H11_3817 0.56 +0.1 32,955 - Ac3H11_3817 0.56 +1.1 32,955 - Ac3H11_3817 0.56 -1.1 33,207 - Ac3H11_3817 0.79 -0.6 33,207 - Ac3H11_3817 0.79 -1.2 33,207 - Ac3H11_3817 0.79 -1.8 33,378 - -0.3 33,427 + -1.4 33,427 + -1.0 33,428 - +0.0 33,428 - +0.2 33,428 - -1.7
Or see this region's nucleotide sequence