Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3527

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3526 and Ac3H11_3527 are separated by 115 nucleotidesAc3H11_3527 and Ac3H11_3528 are separated by 541 nucleotides Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324 _3526 Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925 _3527 Ac3H11_3528 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 73,467 to 74,030 _3528 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 71.595 kb on + strand, within Ac3H11_3526at 71.596 kb on - strand, within Ac3H11_3526at 71.961 kb on + strand, within Ac3H11_3526at 71.961 kb on + strand, within Ac3H11_3526at 71.993 kb on - strand, within Ac3H11_3526at 72.157 kb on + strand, within Ac3H11_3526at 72.157 kb on + strand, within Ac3H11_3526at 72.157 kb on + strand, within Ac3H11_3526at 72.158 kb on - strand, within Ac3H11_3526at 72.158 kb on - strand, within Ac3H11_3526at 72.158 kb on - strand, within Ac3H11_3526at 72.217 kb on + strand, within Ac3H11_3526at 72.217 kb on + strand, within Ac3H11_3526at 72.217 kb on + strand, within Ac3H11_3526at 72.270 kb on + strandat 72.322 kb on + strandat 72.338 kb on - strandat 72.457 kb on + strandat 73.109 kb on - strandat 73.109 kb on - strandat 73.187 kb on - strandat 73.372 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.755 kb on + strand, within Ac3H11_3528at 73.755 kb on + strand, within Ac3H11_3528at 73.756 kb on - strand, within Ac3H11_3528at 73.756 kb on - strand, within Ac3H11_3528

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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71,595 + Ac3H11_3526 0.22 -1.1
71,596 - Ac3H11_3526 0.22 +1.4
71,961 + Ac3H11_3526 0.61 -1.5
71,961 + Ac3H11_3526 0.61 -2.1
71,993 - Ac3H11_3526 0.65 -2.6
72,157 + Ac3H11_3526 0.82 -0.4
72,157 + Ac3H11_3526 0.82 +0.7
72,157 + Ac3H11_3526 0.82 +1.3
72,158 - Ac3H11_3526 0.82 +0.2
72,158 - Ac3H11_3526 0.82 +0.1
72,158 - Ac3H11_3526 0.82 -0.7
72,217 + Ac3H11_3526 0.88 -0.4
72,217 + Ac3H11_3526 0.88 +0.8
72,217 + Ac3H11_3526 0.88 -1.8
72,270 + -1.6
72,322 + -1.7
72,338 - +0.1
72,457 + -0.7
73,109 - +1.2
73,109 - +0.7
73,187 - -1.2
73,372 - -0.5
73,488 - +1.8
73,488 - -0.0
73,488 - -0.1
73,755 + Ac3H11_3528 0.51 +0.2
73,755 + Ac3H11_3528 0.51 +0.2
73,756 - Ac3H11_3528 0.51 +1.1
73,756 - Ac3H11_3528 0.51 +1.0

Or see this region's nucleotide sequence