Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2523 and Ac3H11_2524 are separated by 190 nucleotides Ac3H11_2524 and Ac3H11_2525 are separated by 1 nucleotides Ac3H11_2525 and Ac3H11_2526 are separated by 2 nucleotides
Ac3H11_2523 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 799,613 to 801,712
_2523
Ac3H11_2524 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 801,903 to 802,598
_2524
Ac3H11_2525 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 802,600 to 803,385
_2525
Ac3H11_2526 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 803,388 to 804,713
_2526
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1
2 at 801.066 kb on + strand, within Ac3H11_2523 at 801.066 kb on + strand, within Ac3H11_2523 at 801.066 kb on + strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.067 kb on - strand, within Ac3H11_2523 at 801.379 kb on - strand, within Ac3H11_2523 at 801.699 kb on + strand at 801.699 kb on + strand at 801.699 kb on + strand at 801.699 kb on + strand at 801.700 kb on - strand at 801.700 kb on - strand at 801.700 kb on - strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.764 kb on + strand at 801.838 kb on - strand at 801.865 kb on - strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.931 kb on + strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.932 kb on - strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.935 kb on + strand at 801.936 kb on - strand at 802.081 kb on + strand at 802.082 kb on - strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.255 kb on + strand, within Ac3H11_2524 at 802.256 kb on - strand, within Ac3H11_2524 at 802.256 kb on - strand, within Ac3H11_2524 at 802.256 kb on - strand, within Ac3H11_2524 at 802.364 kb on - strand, within Ac3H11_2524 at 802.364 kb on - strand, within Ac3H11_2524 at 802.567 kb on + strand at 802.570 kb on + strand at 802.570 kb on + strand at 802.570 kb on + strand at 802.571 kb on - strand at 802.571 kb on - strand at 802.643 kb on + strand at 802.643 kb on + strand at 802.644 kb on - strand at 802.709 kb on + strand, within Ac3H11_2525 at 802.710 kb on - strand, within Ac3H11_2525 at 802.710 kb on - strand, within Ac3H11_2525 at 802.710 kb on - strand, within Ac3H11_2525 at 802.922 kb on + strand, within Ac3H11_2525 at 802.923 kb on - strand, within Ac3H11_2525 at 802.926 kb on + strand, within Ac3H11_2525 at 802.926 kb on + strand, within Ac3H11_2525 at 802.927 kb on - strand, within Ac3H11_2525 at 803.036 kb on + strand, within Ac3H11_2525 at 803.037 kb on - strand, within Ac3H11_2525 at 803.037 kb on - strand, within Ac3H11_2525 at 803.037 kb on - strand, within Ac3H11_2525 at 803.043 kb on - strand, within Ac3H11_2525 at 803.263 kb on + strand, within Ac3H11_2525 at 803.263 kb on + strand, within Ac3H11_2525 at 803.263 kb on + strand, within Ac3H11_2525 at 803.264 kb on - strand, within Ac3H11_2525 at 803.264 kb on - strand, within Ac3H11_2525 at 803.264 kb on - strand, within Ac3H11_2525 at 803.363 kb on + strand at 803.364 kb on - strand at 803.364 kb on - strand at 803.389 kb on + strand at 803.389 kb on + strand at 803.389 kb on + strand at 803.389 kb on + strand at 803.390 kb on - strand at 803.390 kb on - strand at 803.421 kb on + strand at 803.421 kb on + strand at 803.422 kb on - strand at 803.422 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 801,066 + Ac3H11_2523 0.69 +0.6 801,066 + Ac3H11_2523 0.69 +0.3 801,066 + Ac3H11_2523 0.69 -1.0 801,067 - Ac3H11_2523 0.69 -0.9 801,067 - Ac3H11_2523 0.69 -1.0 801,067 - Ac3H11_2523 0.69 -0.1 801,067 - Ac3H11_2523 0.69 -0.5 801,067 - Ac3H11_2523 0.69 -0.3 801,067 - Ac3H11_2523 0.69 -0.1 801,067 - Ac3H11_2523 0.69 -0.3 801,379 - Ac3H11_2523 0.84 -1.1 801,699 + +1.1 801,699 + -1.5 801,699 + -0.6 801,699 + +1.1 801,700 - +0.1 801,700 - +0.3 801,700 - +0.7 801,764 + +0.6 801,764 + -0.5 801,764 + +0.6 801,838 - -1.0 801,865 - +0.7 801,931 + +1.4 801,931 + -1.1 801,931 + -0.3 801,931 + -0.1 801,931 + -0.5 801,931 + -0.0 801,931 + +0.2 801,931 + -0.3 801,931 + -0.7 801,931 + -2.1 801,932 - +0.2 801,932 - -0.1 801,932 - -0.9 801,932 - +0.7 801,932 - -0.0 801,932 - -0.6 801,932 - -0.2 801,932 - -0.8 801,932 - +0.1 801,932 - -1.0 801,935 + -1.8 801,935 + -0.9 801,935 + -0.4 801,935 + +0.2 801,935 + -0.2 801,935 + -0.4 801,935 + -1.5 801,935 + -0.6 801,936 - -1.2 802,081 + +0.0 802,082 - Ac3H11_2524 0.26 -1.3 802,255 + Ac3H11_2524 0.51 -0.4 802,255 + Ac3H11_2524 0.51 -0.4 802,255 + Ac3H11_2524 0.51 -0.7 802,255 + Ac3H11_2524 0.51 -0.2 802,255 + Ac3H11_2524 0.51 -0.4 802,255 + Ac3H11_2524 0.51 +0.8 802,255 + Ac3H11_2524 0.51 +0.4 802,256 - Ac3H11_2524 0.51 -0.1 802,256 - Ac3H11_2524 0.51 -1.9 802,256 - Ac3H11_2524 0.51 -2.2 802,364 - Ac3H11_2524 0.66 -1.1 802,364 - Ac3H11_2524 0.66 +0.0 802,567 + +0.8 802,570 + -2.3 802,570 + -1.2 802,570 + -0.5 802,571 - +0.9 802,571 - +1.9 802,643 + -1.4 802,643 + -0.4 802,644 - +1.9 802,709 + Ac3H11_2525 0.14 +1.2 802,710 - Ac3H11_2525 0.14 -0.1 802,710 - Ac3H11_2525 0.14 -2.6 802,710 - Ac3H11_2525 0.14 -2.3 802,922 + Ac3H11_2525 0.41 -0.2 802,923 - Ac3H11_2525 0.41 +0.8 802,926 + Ac3H11_2525 0.41 -1.9 802,926 + Ac3H11_2525 0.41 -2.1 802,927 - Ac3H11_2525 0.42 -0.9 803,036 + Ac3H11_2525 0.55 +0.6 803,037 - Ac3H11_2525 0.56 -0.6 803,037 - Ac3H11_2525 0.56 -0.7 803,037 - Ac3H11_2525 0.56 -2.1 803,043 - Ac3H11_2525 0.56 -1.9 803,263 + Ac3H11_2525 0.84 -1.7 803,263 + Ac3H11_2525 0.84 -2.3 803,263 + Ac3H11_2525 0.84 -1.5 803,264 - Ac3H11_2525 0.84 -0.3 803,264 - Ac3H11_2525 0.84 +1.3 803,264 - Ac3H11_2525 0.84 -0.5 803,363 + +1.6 803,364 - -0.5 803,364 - -0.2 803,389 + +0.6 803,389 + +0.1 803,389 + -0.2 803,389 + +0.8 803,390 - -0.7 803,390 - +1.2 803,421 + +0.7 803,421 + -0.0 803,422 - -0.6 803,422 - -0.3
Or see this region's nucleotide sequence