Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2390

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_2388 and Ac3H11_2389 are separated by 181 nucleotidesAc3H11_2389 and Ac3H11_2390 are separated by 35 nucleotidesAc3H11_2390 and Ac3H11_2391 are separated by 26 nucleotides Ac3H11_2388 - Adenylate kinase (EC 2.7.4.3), at 647,260 to 647,916 _2388 Ac3H11_2389 - hypothetical protein, at 648,098 to 648,568 _2389 Ac3H11_2390 - putative membrane protein, at 648,604 to 649,023 _2390 Ac3H11_2391 - L-asparaginase (EC 3.5.1.1), at 649,050 to 650,003 _2391 Position (kb) 648 649 650Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 647.928 kb on - strandat 647.939 kb on + strandat 647.939 kb on + strandat 647.970 kb on - strandat 648.009 kb on + strandat 648.073 kb on + strandat 648.073 kb on + strandat 648.074 kb on - strandat 648.074 kb on - strandat 648.074 kb on - strandat 648.075 kb on + strandat 648.123 kb on + strandat 648.123 kb on + strandat 648.123 kb on + strandat 648.124 kb on - strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.147 kb on + strand, within Ac3H11_2389at 648.147 kb on + strand, within Ac3H11_2389at 648.147 kb on + strand, within Ac3H11_2389at 648.147 kb on + strand, within Ac3H11_2389at 648.148 kb on - strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.466 kb on - strand, within Ac3H11_2389at 648.568 kb on + strandat 648.568 kb on + strandat 648.568 kb on + strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.606 kb on - strandat 648.606 kb on - strandat 648.611 kb on + strandat 648.612 kb on - strandat 648.612 kb on - strandat 648.989 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.023 kb on + strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.024 kb on - strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.029 kb on + strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.030 kb on - strandat 649.033 kb on + strandat 649.033 kb on + strandat 649.033 kb on + strandat 649.034 kb on - strandat 649.034 kb on - strandat 649.377 kb on - strand, within Ac3H11_2391at 649.382 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.899 kb on + strand, within Ac3H11_2391at 649.900 kb on - strand, within Ac3H11_2391at 649.900 kb on - strand, within Ac3H11_2391at 649.921 kb on + strandat 649.922 kb on - strandat 649.953 kb on - strandat 650.009 kb on + strandat 650.010 kb on - strandat 650.010 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
647,928 - +1.6
647,939 + -0.3
647,939 + +1.0
647,970 - -0.9
648,009 + -2.7
648,073 + -0.1
648,073 + +0.5
648,074 - +0.2
648,074 - +0.7
648,074 - +0.6
648,075 + -2.0
648,123 + +1.5
648,123 + -0.4
648,123 + +0.1
648,124 - +0.5
648,141 + +0.8
648,141 + +0.1
648,141 + -1.3
648,141 + -1.4
648,141 + -2.0
648,141 + +0.5
648,141 + +0.3
648,141 + -1.0
648,141 + -0.3
648,141 + -0.2
648,141 + +1.2
648,141 + +0.1
648,141 + -0.3
648,141 + +0.7
648,141 + +1.1
648,141 + -0.1
648,142 - +0.4
648,142 - +0.4
648,142 - -0.1
648,142 - +1.9
648,142 - +0.1
648,142 - +0.6
648,142 - +1.1
648,142 - -0.5
648,142 - +0.2
648,142 - -0.1
648,142 - +0.0
648,142 - +1.3
648,142 - +0.3
648,142 - +0.8
648,147 + Ac3H11_2389 0.10 -1.2
648,147 + Ac3H11_2389 0.10 +1.1
648,147 + Ac3H11_2389 0.10 +1.9
648,147 + Ac3H11_2389 0.10 +1.5
648,148 - Ac3H11_2389 0.11 +0.7
648,465 + Ac3H11_2389 0.78 -0.3
648,465 + Ac3H11_2389 0.78 +0.3
648,465 + Ac3H11_2389 0.78 +0.4
648,465 + Ac3H11_2389 0.78 -0.1
648,465 + Ac3H11_2389 0.78 +1.2
648,465 + Ac3H11_2389 0.78 -1.4
648,465 + Ac3H11_2389 0.78 -0.2
648,465 + Ac3H11_2389 0.78 -1.0
648,466 - Ac3H11_2389 0.78 -0.1
648,568 + +0.2
648,568 + +0.5
648,568 + -1.7
648,569 - -0.1
648,569 - +0.4
648,569 - -0.9
648,569 - +0.2
648,569 - -1.2
648,606 - -0.1
648,606 - +1.1
648,611 + +0.2
648,612 - -2.4
648,612 - -0.9
648,989 + +0.3
649,023 + +0.4
649,023 + +0.8
649,023 + -1.5
649,023 + -0.4
649,023 + -0.6
649,023 + -0.4
649,023 + -0.9
649,023 + -1.3
649,023 + -0.6
649,023 + +1.3
649,023 + +0.0
649,023 + -0.5
649,023 + +0.8
649,023 + -1.8
649,024 - -0.2
649,024 - +0.6
649,024 - -0.6
649,024 - -0.3
649,024 - -0.7
649,024 - +0.1
649,024 - +0.4
649,024 - -1.0
649,024 - -1.3
649,024 - -0.4
649,024 - -0.3
649,024 - +1.1
649,029 + +0.1
649,029 + -1.6
649,029 + +1.2
649,029 + +0.6
649,029 + +0.4
649,029 + -1.3
649,029 + -0.8
649,029 + -1.1
649,029 + -1.3
649,029 + -3.4
649,030 - +0.1
649,030 - -0.6
649,030 - +0.1
649,030 - -0.2
649,030 - -0.4
649,030 - -0.9
649,030 - +1.3
649,030 - +0.4
649,030 - -1.7
649,030 - +1.0
649,033 + +0.0
649,033 + +0.7
649,033 + -0.5
649,034 - -1.5
649,034 - +0.1
649,377 - Ac3H11_2391 0.34 -0.7
649,382 + Ac3H11_2391 0.35 +0.1
649,899 + Ac3H11_2391 0.89 -2.5
649,899 + Ac3H11_2391 0.89 -1.2
649,899 + Ac3H11_2391 0.89 +0.2
649,899 + Ac3H11_2391 0.89 -2.1
649,900 - Ac3H11_2391 0.89 -0.8
649,900 - Ac3H11_2391 0.89 -0.5
649,921 + -0.9
649,922 - -0.8
649,953 - +0.4
650,009 + -2.4
650,010 - -0.8
650,010 - -0.4

Or see this region's nucleotide sequence