Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2388

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2387 and Ac3H11_2388 are separated by 210 nucleotidesAc3H11_2388 and Ac3H11_2389 are separated by 181 nucleotidesAc3H11_2389 and Ac3H11_2390 are separated by 35 nucleotides Ac3H11_2387 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 646,231 to 647,049 _2387 Ac3H11_2388 - Adenylate kinase (EC 2.7.4.3), at 647,260 to 647,916 _2388 Ac3H11_2389 - hypothetical protein, at 648,098 to 648,568 _2389 Ac3H11_2390 - putative membrane protein, at 648,604 to 649,023 _2390 Position (kb) 647 648Strain fitness (log2 ratio) -2 -1 0 1 2at 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.110 kb on + strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.111 kb on - strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.122 kb on + strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.123 kb on - strandat 647.148 kb on + strandat 647.148 kb on + strandat 647.148 kb on + strandat 647.149 kb on - strandat 647.196 kb on + strandat 647.242 kb on + strandat 647.928 kb on - strandat 647.939 kb on + strandat 647.939 kb on + strandat 647.970 kb on - strandat 648.009 kb on + strandat 648.073 kb on + strandat 648.073 kb on + strandat 648.074 kb on - strandat 648.074 kb on - strandat 648.074 kb on - strandat 648.075 kb on + strandat 648.123 kb on + strandat 648.123 kb on + strandat 648.123 kb on + strandat 648.124 kb on - strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.141 kb on + strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.142 kb on - strandat 648.147 kb on + strand, within Ac3H11_2389at 648.147 kb on + strand, within Ac3H11_2389at 648.147 kb on + strand, within Ac3H11_2389at 648.147 kb on + strand, within Ac3H11_2389at 648.148 kb on - strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.465 kb on + strand, within Ac3H11_2389at 648.466 kb on - strand, within Ac3H11_2389at 648.568 kb on + strandat 648.568 kb on + strandat 648.568 kb on + strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.569 kb on - strandat 648.606 kb on - strandat 648.606 kb on - strandat 648.611 kb on + strandat 648.612 kb on - strandat 648.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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647,110 + -0.6
647,110 + +0.8
647,110 + +0.4
647,110 + +0.5
647,110 + +1.2
647,110 + +1.0
647,110 + -1.6
647,111 - -1.5
647,111 - -0.1
647,111 - -1.0
647,111 - +1.8
647,111 - -0.2
647,122 + +0.5
647,122 + -0.1
647,122 + -0.1
647,122 + +1.5
647,122 + +0.1
647,122 + -0.6
647,122 + -0.9
647,122 + +1.1
647,123 - -0.1
647,123 - +0.7
647,123 - -2.5
647,123 - -0.1
647,123 - +0.2
647,148 + +0.6
647,148 + +0.2
647,148 + +1.1
647,149 - -0.3
647,196 + -1.5
647,242 + -1.6
647,928 - +1.6
647,939 + -0.3
647,939 + +1.0
647,970 - -0.9
648,009 + -2.7
648,073 + -0.1
648,073 + +0.5
648,074 - +0.2
648,074 - +0.7
648,074 - +0.6
648,075 + -2.0
648,123 + +1.5
648,123 + -0.4
648,123 + +0.1
648,124 - +0.5
648,141 + +0.8
648,141 + +0.1
648,141 + -1.3
648,141 + -1.4
648,141 + -2.0
648,141 + +0.5
648,141 + +0.3
648,141 + -1.0
648,141 + -0.3
648,141 + -0.2
648,141 + +1.2
648,141 + +0.1
648,141 + -0.3
648,141 + +0.7
648,141 + +1.1
648,141 + -0.1
648,142 - +0.4
648,142 - +0.4
648,142 - -0.1
648,142 - +1.9
648,142 - +0.1
648,142 - +0.6
648,142 - +1.1
648,142 - -0.5
648,142 - +0.2
648,142 - -0.1
648,142 - +0.0
648,142 - +1.3
648,142 - +0.3
648,142 - +0.8
648,147 + Ac3H11_2389 0.10 -1.2
648,147 + Ac3H11_2389 0.10 +1.1
648,147 + Ac3H11_2389 0.10 +1.9
648,147 + Ac3H11_2389 0.10 +1.5
648,148 - Ac3H11_2389 0.11 +0.7
648,465 + Ac3H11_2389 0.78 -0.3
648,465 + Ac3H11_2389 0.78 +0.3
648,465 + Ac3H11_2389 0.78 +0.4
648,465 + Ac3H11_2389 0.78 -0.1
648,465 + Ac3H11_2389 0.78 +1.2
648,465 + Ac3H11_2389 0.78 -1.4
648,465 + Ac3H11_2389 0.78 -0.2
648,465 + Ac3H11_2389 0.78 -1.0
648,466 - Ac3H11_2389 0.78 -0.1
648,568 + +0.2
648,568 + +0.5
648,568 + -1.7
648,569 - -0.1
648,569 - +0.4
648,569 - -0.9
648,569 - +0.2
648,569 - -1.2
648,606 - -0.1
648,606 - +1.1
648,611 + +0.2
648,612 - -2.4
648,612 - -0.9

Or see this region's nucleotide sequence