Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2385 and Ac3H11_2386 are separated by 48 nucleotides Ac3H11_2386 and Ac3H11_2387 overlap by 4 nucleotides Ac3H11_2387 and Ac3H11_2388 are separated by 210 nucleotides
Ac3H11_2385 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 644,891 to 646,003
_2385
Ac3H11_2386 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 646,052 to 646,234
_2386
Ac3H11_2387 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 646,231 to 647,049
_2387
Ac3H11_2388 - Adenylate kinase (EC 2.7.4.3), at 647,260 to 647,916
_2388
Position (kb)
646
647
648 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 646.109 kb on + strand, within Ac3H11_2386 at 646.109 kb on + strand, within Ac3H11_2386 at 647.110 kb on + strand at 647.110 kb on + strand at 647.110 kb on + strand at 647.110 kb on + strand at 647.110 kb on + strand at 647.110 kb on + strand at 647.110 kb on + strand at 647.111 kb on - strand at 647.111 kb on - strand at 647.111 kb on - strand at 647.111 kb on - strand at 647.111 kb on - strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.122 kb on + strand at 647.123 kb on - strand at 647.123 kb on - strand at 647.123 kb on - strand at 647.123 kb on - strand at 647.123 kb on - strand at 647.148 kb on + strand at 647.148 kb on + strand at 647.148 kb on + strand at 647.149 kb on - strand at 647.196 kb on + strand at 647.242 kb on + strand at 647.928 kb on - strand at 647.939 kb on + strand at 647.939 kb on + strand at 647.970 kb on - strand at 648.009 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 646,109 + Ac3H11_2386 0.31 -0.7 646,109 + Ac3H11_2386 0.31 +0.0 647,110 + -0.6 647,110 + +0.8 647,110 + +0.4 647,110 + +0.5 647,110 + +1.2 647,110 + +1.0 647,110 + -1.6 647,111 - -1.5 647,111 - -0.1 647,111 - -1.0 647,111 - +1.8 647,111 - -0.2 647,122 + +0.5 647,122 + -0.1 647,122 + -0.1 647,122 + +1.5 647,122 + +0.1 647,122 + -0.6 647,122 + -0.9 647,122 + +1.1 647,123 - -0.1 647,123 - +0.7 647,123 - -2.5 647,123 - -0.1 647,123 - +0.2 647,148 + +0.6 647,148 + +0.2 647,148 + +1.1 647,149 - -0.3 647,196 + -1.5 647,242 + -1.6 647,928 - +1.6 647,939 + -0.3 647,939 + +1.0 647,970 - -0.9 648,009 + -2.7
Or see this region's nucleotide sequence