Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1944

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1942 and Ac3H11_1943 overlap by 4 nucleotidesAc3H11_1943 and Ac3H11_1944 are separated by 187 nucleotidesAc3H11_1944 and Ac3H11_1945 are separated by 66 nucleotidesAc3H11_1945 and Ac3H11_1946 are separated by 128 nucleotides Ac3H11_1942 - Phenylacetic acid degradation protein paaI, at 157,595 to 158,053 _1942 Ac3H11_1943 - Cu(I)-responsive transcriptional regulator, at 158,050 to 158,505 _1943 Ac3H11_1944 - COG1664: Integral membrane protein CcmA involved in cell shape determination, at 158,693 to 159,277 _1944 Ac3H11_1945 - Acyl-CoA hydrolase (EC 3.1.2.20), at 159,344 to 159,766 _1945 Ac3H11_1946 - Lipid A export ATP-binding/permease protein MsbA, at 159,895 to 161,742 _1946 Position (kb) 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 157.860 kb on + strand, within Ac3H11_1942at 157.861 kb on - strand, within Ac3H11_1942at 157.861 kb on - strand, within Ac3H11_1942at 157.946 kb on - strand, within Ac3H11_1942at 158.330 kb on - strand, within Ac3H11_1943at 158.448 kb on - strand, within Ac3H11_1943at 158.497 kb on + strandat 158.497 kb on + strandat 158.517 kb on + strandat 158.517 kb on + strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.518 kb on - strandat 158.665 kb on + strandat 158.666 kb on - strandat 158.666 kb on - strandat 159.083 kb on + strand, within Ac3H11_1944at 159.284 kb on + strandat 159.285 kb on - strandat 159.391 kb on + strand, within Ac3H11_1945at 159.391 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.405 kb on + strand, within Ac3H11_1945at 159.406 kb on - strand, within Ac3H11_1945at 159.406 kb on - strand, within Ac3H11_1945at 159.406 kb on - strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.435 kb on + strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.436 kb on - strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.465 kb on + strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.466 kb on - strand, within Ac3H11_1945at 159.603 kb on + strand, within Ac3H11_1945at 159.603 kb on + strand, within Ac3H11_1945at 159.604 kb on - strand, within Ac3H11_1945at 159.694 kb on + strand, within Ac3H11_1945at 159.694 kb on + strand, within Ac3H11_1945at 159.695 kb on - strand, within Ac3H11_1945at 159.695 kb on - strand, within Ac3H11_1945at 159.695 kb on - strand, within Ac3H11_1945at 159.695 kb on - strand, within Ac3H11_1945at 159.695 kb on - strand, within Ac3H11_1945at 160.024 kb on + strandat 160.024 kb on + strandat 160.025 kb on - strandat 160.025 kb on - strandat 160.183 kb on + strand, within Ac3H11_1946at 160.183 kb on + strand, within Ac3H11_1946at 160.183 kb on + strand, within Ac3H11_1946at 160.183 kb on + strand, within Ac3H11_1946at 160.184 kb on - strand, within Ac3H11_1946at 160.184 kb on - strand, within Ac3H11_1946at 160.184 kb on - strand, within Ac3H11_1946

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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157,860 + Ac3H11_1942 0.58 +0.8
157,861 - Ac3H11_1942 0.58 +0.4
157,861 - Ac3H11_1942 0.58 +1.4
157,946 - Ac3H11_1942 0.76 +0.3
158,330 - Ac3H11_1943 0.61 +0.3
158,448 - Ac3H11_1943 0.87 -1.0
158,497 + -0.3
158,497 + -0.1
158,517 + -0.1
158,517 + +0.7
158,518 - +2.2
158,518 - +0.7
158,518 - -0.2
158,518 - +0.1
158,518 - -1.4
158,665 + -0.6
158,666 - +0.9
158,666 - +1.0
159,083 + Ac3H11_1944 0.67 -1.4
159,284 + -2.3
159,285 - +0.3
159,391 + Ac3H11_1945 0.11 -0.1
159,391 + Ac3H11_1945 0.11 -0.8
159,405 + Ac3H11_1945 0.14 -0.2
159,405 + Ac3H11_1945 0.14 -1.7
159,405 + Ac3H11_1945 0.14 -0.7
159,405 + Ac3H11_1945 0.14 -3.0
159,406 - Ac3H11_1945 0.15 +0.6
159,406 - Ac3H11_1945 0.15 -0.3
159,406 - Ac3H11_1945 0.15 +0.5
159,435 + Ac3H11_1945 0.22 -0.7
159,435 + Ac3H11_1945 0.22 +0.1
159,435 + Ac3H11_1945 0.22 +1.0
159,435 + Ac3H11_1945 0.22 -0.5
159,435 + Ac3H11_1945 0.22 +0.7
159,435 + Ac3H11_1945 0.22 -0.7
159,435 + Ac3H11_1945 0.22 -0.6
159,435 + Ac3H11_1945 0.22 -1.4
159,436 - Ac3H11_1945 0.22 +0.2
159,436 - Ac3H11_1945 0.22 -1.7
159,436 - Ac3H11_1945 0.22 -1.4
159,436 - Ac3H11_1945 0.22 +1.6
159,436 - Ac3H11_1945 0.22 +0.1
159,465 + Ac3H11_1945 0.29 +0.2
159,465 + Ac3H11_1945 0.29 +0.1
159,465 + Ac3H11_1945 0.29 +0.9
159,465 + Ac3H11_1945 0.29 -0.2
159,465 + Ac3H11_1945 0.29 +1.8
159,465 + Ac3H11_1945 0.29 +0.4
159,465 + Ac3H11_1945 0.29 -0.1
159,465 + Ac3H11_1945 0.29 +1.2
159,466 - Ac3H11_1945 0.29 -0.1
159,466 - Ac3H11_1945 0.29 -0.2
159,466 - Ac3H11_1945 0.29 -0.8
159,466 - Ac3H11_1945 0.29 +0.0
159,603 + Ac3H11_1945 0.61 -1.5
159,603 + Ac3H11_1945 0.61 -0.3
159,604 - Ac3H11_1945 0.61 -0.1
159,694 + Ac3H11_1945 0.83 -0.8
159,694 + Ac3H11_1945 0.83 +0.1
159,695 - Ac3H11_1945 0.83 +0.6
159,695 - Ac3H11_1945 0.83 -0.3
159,695 - Ac3H11_1945 0.83 +0.9
159,695 - Ac3H11_1945 0.83 -3.6
159,695 - Ac3H11_1945 0.83 +0.5
160,024 + +0.0
160,024 + -1.4
160,025 - +0.3
160,025 - +0.7
160,183 + Ac3H11_1946 0.16 -1.6
160,183 + Ac3H11_1946 0.16 +0.6
160,183 + Ac3H11_1946 0.16 +1.5
160,183 + Ac3H11_1946 0.16 +0.1
160,184 - Ac3H11_1946 0.16 +0.3
160,184 - Ac3H11_1946 0.16 +0.0
160,184 - Ac3H11_1946 0.16 +1.9

Or see this region's nucleotide sequence