Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1938

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1936 and Ac3H11_1937 overlap by 4 nucleotidesAc3H11_1937 and Ac3H11_1938 overlap by 4 nucleotidesAc3H11_1938 and Ac3H11_1939 are separated by 9 nucleotides Ac3H11_1936 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 152,217 to 153,035 _1936 Ac3H11_1937 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 153,032 to 153,871 _1937 Ac3H11_1938 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 153,868 to 154,944 _1938 Ac3H11_1939 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 154,954 to 155,829 _1939 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 152.997 kb on + strandat 153.102 kb on + strandat 153.102 kb on + strandat 153.418 kb on - strand, within Ac3H11_1937at 153.678 kb on + strand, within Ac3H11_1937at 153.705 kb on + strand, within Ac3H11_1937at 153.705 kb on + strand, within Ac3H11_1937at 153.706 kb on - strand, within Ac3H11_1937at 153.706 kb on - strand, within Ac3H11_1937at 154.022 kb on + strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.023 kb on - strand, within Ac3H11_1938at 154.236 kb on - strand, within Ac3H11_1938at 154.236 kb on - strand, within Ac3H11_1938at 154.430 kb on + strand, within Ac3H11_1938at 154.430 kb on + strand, within Ac3H11_1938at 154.431 kb on - strand, within Ac3H11_1938at 154.574 kb on + strand, within Ac3H11_1938at 154.574 kb on + strand, within Ac3H11_1938at 154.575 kb on - strand, within Ac3H11_1938at 154.575 kb on - strand, within Ac3H11_1938at 154.575 kb on - strand, within Ac3H11_1938at 154.697 kb on + strand, within Ac3H11_1938at 154.697 kb on + strand, within Ac3H11_1938at 154.697 kb on + strand, within Ac3H11_1938at 154.697 kb on + strand, within Ac3H11_1938at 154.698 kb on - strand, within Ac3H11_1938at 154.698 kb on - strand, within Ac3H11_1938at 154.698 kb on - strand, within Ac3H11_1938at 154.787 kb on + strand, within Ac3H11_1938at 154.788 kb on - strand, within Ac3H11_1938at 154.821 kb on - strand, within Ac3H11_1938at 154.871 kb on + strandat 154.919 kb on + strandat 154.920 kb on - strandat 155.027 kb on + strandat 155.027 kb on + strandat 155.028 kb on - strandat 155.028 kb on - strandat 155.028 kb on - strandat 155.028 kb on - strandat 155.060 kb on + strand, within Ac3H11_1939at 155.061 kb on - strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.288 kb on + strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.289 kb on - strand, within Ac3H11_1939at 155.292 kb on - strand, within Ac3H11_1939at 155.292 kb on - strand, within Ac3H11_1939at 155.292 kb on - strand, within Ac3H11_1939at 155.345 kb on + strand, within Ac3H11_1939at 155.453 kb on + strand, within Ac3H11_1939at 155.469 kb on + strand, within Ac3H11_1939at 155.469 kb on + strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.470 kb on - strand, within Ac3H11_1939at 155.522 kb on + strand, within Ac3H11_1939at 155.747 kb on + strandat 155.747 kb on + strandat 155.748 kb on - strandat 155.780 kb on + strandat 155.781 kb on - strandat 155.781 kb on - strandat 155.781 kb on - strandat 155.781 kb on - strandat 155.871 kb on + strandat 155.876 kb on - strandat 155.876 kb on - strandat 155.914 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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152,997 + +0.5
153,102 + -1.1
153,102 + +0.2
153,418 - Ac3H11_1937 0.46 -1.2
153,678 + Ac3H11_1937 0.77 -0.6
153,705 + Ac3H11_1937 0.80 -0.2
153,705 + Ac3H11_1937 0.80 +0.3
153,706 - Ac3H11_1937 0.80 -1.3
153,706 - Ac3H11_1937 0.80 -0.6
154,022 + Ac3H11_1938 0.14 +0.0
154,023 - Ac3H11_1938 0.14 +0.4
154,023 - Ac3H11_1938 0.14 -1.0
154,023 - Ac3H11_1938 0.14 -2.0
154,023 - Ac3H11_1938 0.14 +0.3
154,236 - Ac3H11_1938 0.34 +0.6
154,236 - Ac3H11_1938 0.34 +0.3
154,430 + Ac3H11_1938 0.52 -0.3
154,430 + Ac3H11_1938 0.52 +0.8
154,431 - Ac3H11_1938 0.52 -1.4
154,574 + Ac3H11_1938 0.66 -0.0
154,574 + Ac3H11_1938 0.66 -0.1
154,575 - Ac3H11_1938 0.66 +1.1
154,575 - Ac3H11_1938 0.66 +0.7
154,575 - Ac3H11_1938 0.66 -1.2
154,697 + Ac3H11_1938 0.77 +0.8
154,697 + Ac3H11_1938 0.77 +0.7
154,697 + Ac3H11_1938 0.77 -1.8
154,697 + Ac3H11_1938 0.77 -0.3
154,698 - Ac3H11_1938 0.77 +0.3
154,698 - Ac3H11_1938 0.77 -0.6
154,698 - Ac3H11_1938 0.77 -0.1
154,787 + Ac3H11_1938 0.85 -0.5
154,788 - Ac3H11_1938 0.85 +0.8
154,821 - Ac3H11_1938 0.88 -0.6
154,871 + -2.4
154,919 + +0.3
154,920 - -1.0
155,027 + -2.8
155,027 + +0.1
155,028 - -0.3
155,028 - -0.3
155,028 - +1.8
155,028 - +0.5
155,060 + Ac3H11_1939 0.12 -0.1
155,061 - Ac3H11_1939 0.12 -0.9
155,288 + Ac3H11_1939 0.38 +0.5
155,288 + Ac3H11_1939 0.38 +0.6
155,288 + Ac3H11_1939 0.38 -0.3
155,288 + Ac3H11_1939 0.38 +0.2
155,288 + Ac3H11_1939 0.38 +0.6
155,288 + Ac3H11_1939 0.38 +0.1
155,288 + Ac3H11_1939 0.38 -0.1
155,289 - Ac3H11_1939 0.38 +0.1
155,289 - Ac3H11_1939 0.38 +0.9
155,289 - Ac3H11_1939 0.38 +0.8
155,289 - Ac3H11_1939 0.38 -0.4
155,289 - Ac3H11_1939 0.38 -1.1
155,289 - Ac3H11_1939 0.38 +0.2
155,289 - Ac3H11_1939 0.38 -1.1
155,289 - Ac3H11_1939 0.38 +0.7
155,289 - Ac3H11_1939 0.38 +1.5
155,289 - Ac3H11_1939 0.38 -1.1
155,289 - Ac3H11_1939 0.38 +0.7
155,292 - Ac3H11_1939 0.39 +0.5
155,292 - Ac3H11_1939 0.39 -0.2
155,292 - Ac3H11_1939 0.39 +0.8
155,345 + Ac3H11_1939 0.45 +0.4
155,453 + Ac3H11_1939 0.57 +0.1
155,469 + Ac3H11_1939 0.59 -1.4
155,469 + Ac3H11_1939 0.59 +0.6
155,470 - Ac3H11_1939 0.59 -0.3
155,470 - Ac3H11_1939 0.59 +0.1
155,470 - Ac3H11_1939 0.59 +0.7
155,470 - Ac3H11_1939 0.59 -0.5
155,522 + Ac3H11_1939 0.65 +0.2
155,747 + -0.1
155,747 + -0.4
155,748 - -1.4
155,780 + +0.1
155,781 - -0.7
155,781 - -0.6
155,781 - -0.6
155,781 - +0.7
155,871 + -0.8
155,876 - -0.1
155,876 - +0.2
155,914 - -0.1

Or see this region's nucleotide sequence